Gene
| Gene Model ID | pfu_aug1.0_18654.1_47238 |
|---|---|
| Locus | scaffold18654.1 : 1 ... 22906 : + |
| To GenomeBrowser | scaffold18654.1:1..22906 |
| Genes list of scaffold | scaffold18654.1 |
| Synonym | pfu_aug2.0_959.1_31308 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-bmal |
| Description | Best hit to EAW68508 aryl hydrocarbon receptor nuclear translocator-like, isoform CRA_f [Homo sapiens] with 6e-74 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18654.1_47238.t1 | 2 | 1 | HLH | 40 | 91 | 3.4e-16 | 58.6 | 4.6e-20 | 3.4e-16 | 58.6 |
| pfu_aug1.0_18654.1_47238.t1 | 2 | 2 | HLH | 109 | 118 | 3.4e-16 | 58.6 | 0.33 | 2500.0 | -1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18654.1_47238.t1 | gi|3211720|gb|AAC21449.1| | TIC [Rattus norvegicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_18654.1_47238.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18654.1_47238.t1 ttccagttttaactttgatacttacgacgatgagtccttggactcggacatcagacagttcacaaggatgaagtccatgg aaacgcaaagtgttagcagcaccggaaccggaaatgaaagacaaaatcacagtgagatagaaaagaggcggagggacaaa atgaatgcgtatattgcggagctgtcatcaatgctacccatgtgcaatgcaatgaaccgtaaacttgataagcttaccgt gctcagaatggccgtccaacatctaaaatctcttagaggagcaacaacatccatccccgaggcaaggccatctttcctat cggaagaggagcttaagcaattagttctcgaggctgacctgataggacagagtttgtttgactatctccatcccagggac atcaataaagtcaaagaacagttgtcgtcatcggacctctcacccagagaacgacttattgatgcacggacgatgatgcc ggtaaagacagagttaccgcagaggccaacacatttatgttctggtgctagacgctcgtttttctgccgaatgcgatgtg gactgaaatcatatgacggctccccaggcatgaaggcagaaaaggagacggacatcgatatgtgcccaaggaagaaaaag tctggcgacacttag |
|
Protein
| Protein ID | pfu_aug1.0_18654.1_47238.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18654.1_47238.t1 SSFNFDTYDDESLDSDIRQFTRMKSMETQSVSSTGTGNERQNHSEIEKRRRDKMNAYIAELSSMLPMCNAMNRKLDKLTV LRMAVQHLKSLRGATTSIPEARPSFLSEEELKQLVLEADLIGQSLFDYLHPRDINKVKEQLSSSDLSPRERLIDARTMMP VKTELPQRPTHLCSGARRSFFCRMRCGLKSYDGSPGMKAEKETDIDMCPRKKKSGDT |
|