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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_18674.1_32943
Locus scaffold18674.1 : 13285 ... 21814 : -
To GenomeBrowser scaffold18674.1:13285..21814
Genes list of scaffold scaffold18674.1
Synonym pfu_aug2.0_179.1_30369

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_18674.1_32943.t1 1 1 DUF3677 250 330 5.5e-26 90.8 2.1e-29 1.5e-25 89.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_18674.1_32943.t1 gi|119607608|gb|EAW87202.1| hCG1993380, isoform CRA_a, partial [Homo sapiens] 0.0

Transcript
Transcript IDpfu_aug1.0_18674.1_32943.t1
Definition-
>pfu_aug1.0_18674.1_32943.t1
gggaagtattggaagcagaagacacgtgtaatgatgagagaatggaaggcctactttgtggagcggtcaagcacttacat
tacaataggtcaaaaccagaccaggccgtttacttaaccttgatgtacttggccaaaacacactcagctattttcaacag
tgacgttgtcatacaggccatatctagcttgctaagaagagatttgtctctgaattttaagtccaagggcaattgtttag
tttctgtgttagcctgtgaggtgctaatggaggcattcgacaaggaagataactggccagacgactttgtaaaggtattt
gttgaggattcattaggagagagagtatgggttgataggtcagactgcaaagccttcacagataacattattacagcctt
caataccaatctacctgtaaaacctacaacaagctcggaaactaatcctactaaagaaacctctggaactgcaagtccag
ttgtcatgtttttacaagaagaagatgaaagcactactggtagtggagctagcgaagaaaaagttctagccatagaggaa
attaaaaacatagccgtaactcctaggcaaaatgtgcgattcacggaatttgcacgtgaccaaccagaattatacaacca
tgaacaccaaaagtatcagtttcagcaagagactatagaaagttatatcatggatataatcaaggatcagttcaataaac
gacagccaatggattccatgtcacgtaattttattcgtttcctgacggctacaagcggatatggagaagtcagactatta
gcggcacagaaactagaaatatggctccagaatccaaagctttctaggtcagctcaggaactgttgatggccatatgtat
gaattgtaaccaacacgaccagaacgatttagaggtggtggccctactggtcaagatccgtatgaagaccaagccccttc
ttaaccacttcctaagcagtctcaagaaaattgcttggaattgtgacttttgtcgaagaattcaatgtggccgcatgaaa
cgtttatga

Protein
Protein IDpfu_aug1.0_18674.1_32943.t1
Definition-
>pfu_aug1.0_18674.1_32943.t1
EVLEAEDTCNDERMEGLLCGAVKHLHYNRSKPDQAVYLTLMYLAKTHSAIFNSDVVIQAISSLLRRDLSLNFKSKGNCLV
SVLACEVLMEAFDKEDNWPDDFVKVFVEDSLGERVWVDRSDCKAFTDNIITAFNTNLPVKPTTSSETNPTKETSGTASPV
VMFLQEEDESTTGSGASEEKVLAIEEIKNIAVTPRQNVRFTEFARDQPELYNHEHQKYQFQQETIESYIMDIIKDQFNKR
QPMDSMSRNFIRFLTATSGYGEVRLLAAQKLEIWLQNPKLSRSAQELLMAICMNCNQHDQNDLEVVALLVKIRMKTKPLL
NHFLSSLKKIAWNCDFCRRIQCGRMKRL

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