Gene
| Gene Model ID | pfu_aug1.0_1868.1_37158 |
|---|---|
| Locus | scaffold1868.1 : 43396 ... 47605 : - |
| To GenomeBrowser | scaffold1868.1:43396..47605 |
| Genes list of scaffold | scaffold1868.1 |
| Synonym | pfu_aug2.0_2151.1_05427 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-neurogenin |
| Description | Best hit to AAB37575 bHLH protein related to neuroD; neurogenic basic-helix-loop-helix protein [Homo sapiens] with 2e-24 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1868.1_37158.t1 | 1 | 1 | HLH | 98 | 150 | 3.2e-16 | 58.7 | 4.0e-20 | 5.9e-16 | 57.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1868.1_37158.t1 | gi|189094806|emb|CAQ57535.1| | neurogenin [Platynereis dumerilii] | 2.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1868.1_37158.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1868.1_37158.t1 atgaccaccaaagtggactttgattttatatcatcaccagtgaatgacacttgcctaagttccacatcgtcttatccata ttcatcacaatcatcggtttctgcagtggacatttcgtcagagatggactttgatagttcttgtatgggagaagtctttg ttaacgatgcagagtctgaaacacccgtttctgtaccacagaagactgacgctaccccaaaacgtaaacgatacaataaa tccaggaaaagagaaaggagtccaggattagtagaaaaactcaagaaaaccagacgatcgaaggcaaacgacagagagag gaacaggatgcatggacttaatgatgctttggagcgactgaggaaagttttgccgacaaacaatagtggtgaaaacaagc ttaccaagatagaaacactcagaatggcttacaattatatatggacactgtcgcagactttggaactattggataagatt cccgatcaaggacacaatgacattccgcagacgatcgtgaagtcagagtcgcagaacatgccgtgtcgtctgcagactcc gcctcagcatccggactgttcttttatatctgttgaccaacatcagaacttacaaaactccaaattcgtcttgcagaata caaattgtttcaaagtgacatcggattgtgtaaatgatatacatggatctccgttacgccattttgtgacgcccgttacc agctcaagtccagcgttccgtgcgtctttactacctccagtaatctcggacagctctgtggtgacgccagtgacacattc gatgggtaacggacattacggatggggaaatataccctactacacagagaatttcccttctagtcccgctgaacactcgg acacttctgatggattttcgtacgagatgttcccatag |
|
Protein
| Protein ID | pfu_aug1.0_1868.1_37158.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1868.1_37158.t1 MTTKVDFDFISSPVNDTCLSSTSSYPYSSQSSVSAVDISSEMDFDSSCMGEVFVNDAESETPVSVPQKTDATPKRKRYNK SRKRERSPGLVEKLKKTRRSKANDRERNRMHGLNDALERLRKVLPTNNSGENKLTKIETLRMAYNYIWTLSQTLELLDKI PDQGHNDIPQTIVKSESQNMPCRLQTPPQHPDCSFISVDQHQNLQNSKFVLQNTNCFKVTSDCVNDIHGSPLRHFVTPVT SSSPAFRASLLPPVISDSSVVTPVTHSMGNGHYGWGNIPYYTENFPSSPAEHSDTSDGFSYEMFP |
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