Gene
| Gene Model ID | pfu_aug1.0_1868.1_37159 |
|---|---|
| Locus | scaffold1868.1 : 71236 ... 76826 : + |
| To GenomeBrowser | scaffold1868.1:71236..76826 |
| Genes list of scaffold | scaffold1868.1 |
| Synonym | pfu_aug2.0_2151.1_05428 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-amber |
| Description | Best hit to Adi-amber by a BLASTP search against Acropora digitifera protein database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1868.1_37159.t1 | 1 | 1 | HLH | 97 | 149 | 6.3e-17 | 61.0 | 2.0e-20 | 1.5e-16 | 59.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1868.1_37159.t1 | gi|156370137|ref|XP_001628328.1| | predicted protein [Nematostella vectensis] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug1.0_1868.1_37159.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1868.1_37159.t1 atgcattgcaatcaggagaatataaaacattaccaaacgtacgaagacgacatgtgtctttcctttgaggacaggaatta cgttgaaagtgtggactttgagtatgagtatgactatgattacgatgggtatggcggaagtggtcaatatggacagaata ttcagccggagcatgtgccatcttacacgtgccaccaatacgcctactacgacggtcaatatcaggctgaccattcgcct gctgaaaagccacaatcaaaaaaactgaagcccgtgccggacatgatgcgagtttgcgccacagaaagggaaaggaaccg tatgcacatgttaaacgacgcattcgacgagttgcgcaaagtggttcctaaacagaatctaagtgaccatcagaaattat caaaaatagccacgctaaggcttgccatccattacatagcagcattggtcagtacgctgaggaacagtggggttgagatc agagtggtggagagcaagggcatcacggacaggcgaggaaagcgcagaggagcaaagaaaaggaaaaccaataaatcttg a |
|
Protein
| Protein ID | pfu_aug1.0_1868.1_37159.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1868.1_37159.t1 MHCNQENIKHYQTYEDDMCLSFEDRNYVESVDFEYEYDYDYDGYGGSGQYGQNIQPEHVPSYTCHQYAYYDGQYQADHSP AEKPQSKKLKPVPDMMRVCATERERNRMHMLNDAFDELRKVVPKQNLSDHQKLSKIATLRLAIHYIAALVSTLRNSGVEI RVVESKGITDRRGKRRGAKKRKTNKS |
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