Gene
| Gene Model ID | pfu_aug1.0_18703.1_40083 |
|---|---|
| Locus | scaffold18703.1 : 18999 ... 29294 : - |
| To GenomeBrowser | scaffold18703.1:18999..29294 |
| Genes list of scaffold | scaffold18703.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18703.1_40083.t1 | 1 | 1 | C2 | 10 | 73 | 1.4e-07 | 31.2 | 3.2e-11 | 2.4e-07 | 30.5 |
| pfu_aug1.0_18703.1_40083.t1 | 1 | 1 | RhoGAP | 122 | 227 | 7.2e-26 | 90.6 | 1.5e-29 | 1.1e-25 | 89.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18703.1_40083.t1 | gi|344290248|ref|XP_003416850.1| | PREDICTED: LOW QUALITY PROTEIN: active breakpoint cluster region-related protein [Loxodonta africana] | 5.0e-40 |
Transcript
| Transcript ID | pfu_aug1.0_18703.1_40083.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18703.1_40083.t1 atgcatgttcgtcgcacagtattttgtacgccagatacatacgtagagctacacctcgactcttacggccatttctttat gaaggcacgtaccagccaggcgtataacagtacagaccccacatgggacgaggacttcgagttagaactggagggatctc agtcactgaggattctgtgttataaaaagtcctcagataactgtactctgattggacgaagtgcactagagttgagtaca cagtggcttagcagtaaattccaggaacagaaaatcagcatgaatgagactttaaggaatgtttccatagaatttgatga cgttataatcagtctacgtcagataccatctcaaatgggaagtatgacagagttgggaatctacagagtgtcaggggtaa catcagaggtccagaaaatgaaaaaagcctttgacaaaaatattcgagctggtgtgaccatgctggcggatgcagacata cacgctgtcaccgggttactcaaactttacttcagggaattaccagaacctttgtttacagaagccagatataaacagct gttagatagtgtcggactacatgacggggatgccaaggagaaggtcttcctggagttagtacatgatctacctgacgaaa actactataccgtcgtatctgtcatcgaacatctagtcaatacgcaaagcttggttatgtag |
|
Protein
| Protein ID | pfu_aug1.0_18703.1_40083.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18703.1_40083.t1 MHVRRTVFCTPDTYVELHLDSYGHFFMKARTSQAYNSTDPTWDEDFELELEGSQSLRILCYKKSSDNCTLIGRSALELST QWLSSKFQEQKISMNETLRNVSIEFDDVIISLRQIPSQMGSMTELGIYRVSGVTSEVQKMKKAFDKNIRAGVTMLADADI HAVTGLLKLYFRELPEPLFTEARYKQLLDSVGLHDGDAKEKVFLELVHDLPDENYYTVVSVIEHLVNTQSLVM |
|