Gene
| Gene Model ID | pfu_aug1.0_18782.1_54519 |
|---|---|
| Locus | scaffold18782.1 : 10906 ... 14988 : + |
| To GenomeBrowser | scaffold18782.1:10906..14988 |
| Genes list of scaffold | scaffold18782.1 |
| Synonym | pfu_aug2.0_130.1_00283 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18782.1_54519.t1 | 4 | 1 | EF-hand_6 | 6 | 27 | 4.8e-13 | 47.7 | 3.1e-05 | 0.058 | 13.3 |
| pfu_aug1.0_18782.1_54519.t1 | 2 | 1 | EF-hand_7 | 7 | 63 | 1.5e-20 | 73.1 | 1.8e-12 | 3.3e-09 | 36.7 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 1 | EF-hand_5 | 8 | 29 | 8.1e-20 | 69.2 | 3.3e-08 | 6.1e-05 | 22.1 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 1 | EF-hand_1 | 9 | 28 | 5.5e-19 | 65.9 | 1.0e-06 | 0.0019 | 17.3 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 1 | EF-hand_8 | 9 | 29 | 4.2e-12 | 45.4 | 3.5e-05 | 0.064 | 12.8 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 2 | EF-hand_1 | 41 | 63 | 5.5e-19 | 65.9 | 1.4e-07 | 0.00026 | 20.0 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 2 | EF-hand_8 | 46 | 63 | 4.2e-12 | 45.4 | 1.1e-05 | 0.021 | 14.4 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 2 | EF-hand_5 | 50 | 62 | 8.1e-20 | 69.2 | 4.9e-07 | 0.00091 | 18.4 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 2 | EF-hand_6 | 50 | 63 | 4.8e-13 | 47.7 | 0.00031 | 0.58 | 10.1 |
| pfu_aug1.0_18782.1_54519.t1 | 2 | 2 | EF-hand_7 | 79 | 135 | 1.5e-20 | 73.1 | 5.6e-14 | 1.0e-10 | 41.5 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 3 | EF-hand_1 | 79 | 100 | 5.5e-19 | 65.9 | 5.5e-07 | 0.001 | 18.2 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 3 | EF-hand_6 | 79 | 100 | 4.8e-13 | 47.7 | 8.4e-07 | 0.0016 | 18.1 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 3 | EF-hand_5 | 80 | 99 | 8.1e-20 | 69.2 | 8.7e-08 | 0.00016 | 20.8 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 3 | EF-hand_8 | 85 | 96 | 4.2e-12 | 45.4 | 0.065 | 120.0 | 2.3 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 4 | EF-hand_8 | 90 | 133 | 4.2e-12 | 45.4 | 2.3e-08 | 4.3e-05 | 23.0 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 4 | EF-hand_1 | 112 | 134 | 5.5e-19 | 65.9 | 1.5e-06 | 0.0027 | 16.8 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 4 | EF-hand_5 | 117 | 132 | 8.1e-20 | 69.2 | 3.7e-06 | 0.0068 | 15.6 |
| pfu_aug1.0_18782.1_54519.t1 | 4 | 4 | EF-hand_6 | 120 | 135 | 4.8e-13 | 47.7 | 0.00021 | 0.39 | 10.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18782.1_54519.t1 | gi|321458606|gb|EFX69671.1| | hypothetical protein DAPPUDRAFT_217669 [Daphnia pulex] | 1.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_18782.1_54519.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18782.1_54519.t1 atggtagatgaagagaaaagaaagtttgatgccgctgacgtgaacaaggatggttcattagatgaagaggaatatgtggc atttgtctatccttatgacttcgagcacatgcatgacgtggaaatggagagaactatgaatgaacaagacaaaaataaag acgggattatttcaaaagaagaatttatcggagatggtgatacgtcagacagagaatgggttatcatggaagaagagaga ttcaaggattacgatctgaatagggacggtcaactggaaaaggaagaaattcgaaagtgggttttaccagataatactga agctgccaaagaggaagcccagcatcttattgatcgtgccgatgatgataaggatggaaaattgtctttagatgaaatct tagaacatcacgatgattttgtaggaagccaagctacaaactatggcgcatatttacctaaagatgaattataa |
|
Protein
| Protein ID | pfu_aug1.0_18782.1_54519.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18782.1_54519.t1 MVDEEKRKFDAADVNKDGSLDEEEYVAFVYPYDFEHMHDVEMERTMNEQDKNKDGIISKEEFIGDGDTSDREWVIMEEER FKDYDLNRDGQLEKEEIRKWVLPDNTEAAKEEAQHLIDRADDDKDGKLSLDEILEHHDDFVGSQATNYGAYLPKDEL |
|