Gene
| Gene Model ID | pfu_aug1.0_18785.1_18571 |
|---|---|
| Locus | scaffold18785.1 : 8431 ... 10742 : - |
| To GenomeBrowser | scaffold18785.1:8431..10742 |
| Genes list of scaffold | scaffold18785.1 |
| Synonym | pfu_aug2.0_2930.1_02295 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | cytidine deaminase |
| Description | Best hit to EU101721 (abalone). 168 bits, 4e-40 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18785.1_18571.t1 | 1 | 1 | dCMP_cyt_deam_1 | 3 | 98 | 1.0e-18 | 66.8 | 2.5e-22 | 1.2e-18 | 66.5 |
| pfu_aug1.0_18785.1_18571.t1 | 2 | 1 | dCMP_cyt_deam_2 | 4 | 68 | 8.0e-09 | 35.5 | 5.5e-12 | 2.7e-08 | 33.8 |
| pfu_aug1.0_18785.1_18571.t1 | 2 | 2 | dCMP_cyt_deam_2 | 119 | 131 | 8.0e-09 | 35.5 | 0.25 | 1200.0 | -0.6 |
Transcript
| Transcript ID | pfu_aug1.0_18785.1_18571.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18785.1_18571.t1 acaagcgtatccaggacttggtgaaggcagcgatagaggtcaaagccaacgcctactgtccttacagcaactttcgtgtt ggtgcttcactgctgactgaaaacgatgttattgtaacaggctgtaacgtagagaatgcatcttatgggctatctgtttg tgcggaacgagtagctattatgtctgctgtgtcacaaggtcacaccaagttcaaggctgcgacagtttcatgtgacatta aaggagacttcaaagctccgtgtggtgcttgtagacagttttatgccgagttcaacttgaaccttgacctttacctagtg aagccagacaatacagcgaaatgtgtcaaaatcagagacgttttacccatggcgtttacaccgcagtcactcgaggaaga cagaatctaa |
|
Protein
| Protein ID | pfu_aug1.0_18785.1_18571.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18785.1_18571.t1 KRIQDLVKAAIEVKANAYCPYSNFRVGASLLTENDVIVTGCNVENASYGLSVCAERVAIMSAVSQGHTKFKAATVSCDIK GDFKAPCGACRQFYAEFNLNLDLYLVKPDNTAKCVKIRDVLPMAFTPQSLEEDRI |
|