Gene
| Gene Model ID | pfu_aug1.0_1879.1_15646 |
|---|---|
| Locus | scaffold1879.1 : 738 ... 24235 : - |
| To GenomeBrowser | scaffold1879.1:738..24235 |
| Genes list of scaffold | scaffold1879.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1879.1_15646.t1 | 3 | 1 | Collagen | 45 | 83 | 1.8e-19 | 69.0 | 3.6e-11 | 5.3e-07 | 29.0 |
| pfu_aug1.0_1879.1_15646.t1 | 3 | 2 | Collagen | 87 | 129 | 1.8e-19 | 69.0 | 4.3e-11 | 6.4e-07 | 28.8 |
| pfu_aug1.0_1879.1_15646.t1 | 3 | 3 | Collagen | 151 | 181 | 1.8e-19 | 69.0 | 1.5e-09 | 2.2e-05 | 23.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1879.1_15646.t1 | gi|115911557|ref|XP_794521.2| | 9.0e-11 |
Transcript
| Transcript ID | pfu_aug1.0_1879.1_15646.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1879.1_15646.t1 atgatattaaccggatcattccgataccgctgtataaaaaaagttgaacttcaatggttggccatctcctgtgactttaa tccacccactagtgatgaatgctcagaaatccccacgcgccaacctaacaagaggggtatggatggaaaaccaggaaagc agggtcctcgtggacttcaaggagaaactgggttaccaggagaaagaggtcttcctggattggtaggaaagcctggtcca cagggagaaagtattgaaggacctgaaggaccagagggcgaagaaggtcctaaaggcccacctggaccccagggcttacc tggaccagcaggtcaacaagggctaaaaggagacaagggtaagcccgggccaccaggcccaccgggacccggattttcca tgttccagagtgacgacccggtatggaaacaactgacccagatgctccaaggaccgatgggaccctctggtgttgatggc agacccggtgcacctggtaaccagggcccagtcggagccccaggtgctccgggtatggacggaactgacaatgatttact tgcttttgtagttcgtgtttgtcagttttcgttatcatataccatctttacacagttacaagaagataccaatgagagta aatacaaaccacaagtttggatacggtccgatggagataataacgaacgctga |
|
Protein
| Protein ID | pfu_aug1.0_1879.1_15646.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1879.1_15646.t1 MILTGSFRYRCIKKVELQWLAISCDFNPPTSDECSEIPTRQPNKRGMDGKPGKQGPRGLQGETGLPGERGLPGLVGKPGP QGESIEGPEGPEGEEGPKGPPGPQGLPGPAGQQGLKGDKGKPGPPGPPGPGFSMFQSDDPVWKQLTQMLQGPMGPSGVDG RPGAPGNQGPVGAPGAPGMDGTDNDLLAFVVRVCQFSLSYTIFTQLQEDTNESKYKPQVWIRSDGDNNER |
|