Gene
| Gene Model ID | pfu_aug1.0_188.1_14872 |
|---|---|
| Locus | scaffold188.1 : 72584 ... 78045 : - |
| To GenomeBrowser | scaffold188.1:72584..78045 |
| Genes list of scaffold | scaffold188.1 |
| Synonym | pfu_aug2.0_326.1_20607 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_188.1_14872.t1 | 1 | 1 | NACHT | 202 | 373 | 7.8e-09 | 35.4 | 6.4e-12 | 3.1e-08 | 33.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_188.1_14872.t1 | gi|260801962|ref|XP_002595863.1| | hypothetical protein BRAFLDRAFT_84231 [Branchiostoma floridae] | 4.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_188.1_14872.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_188.1_14872.t1 atgtttgccagttgccatactgaagcaaaagttcacaacacactcatgacgtcactctgctgtaactatctggatgagga ctcgtgcaaggacagattcaggaagttcaaatcacattgtaggctctacttgacgactcctagagaaaagagtctgtcta ccgcacaagacatttgggattgcttagaaagcaagggcaagcttggagtggggagttatgaaacccttaaagagctgacc tctgacattgataacgatatcactgaattgatacaagctgcagaaaacaaaattgacgagcttgaaggaagaagaagttc aaaacgccgcaaaactgaatctccagattgtaaaattgaccacctgaaagaaacgctgttgaaaataaacaattccattc taaggaaaaatcaaatatctccccttcaaaaaggggggaaatgcatttccgtcgaccagctgtatgtaccagttaccatc aaagaggataatggttacaacaataatccaaaatatggttctaccgaagaacaagaagaggagacaaagggtaaaagtat aagtgatcttacggaaatgttctaccaaaatggcgatcccgtgaggtatatctttatgcatggagaagctgctcgtggaa aatctatgtattgtaaacaacttttgaattattggtgtaatgctaatcagattggtaaatgtagagaggaactatcagaa catgagacgactcttagcgaatttgacttcacatttcttgtttcgttacgacacgttcatcagagcagaacattacttga agatatgatatgttatgataccttcaagaacaacaaagaatgtcatgatactatacgccatgttttatccagtgatcagt acaggtgcctcattctggttgacggactggatgaatggagaatatcgaaagataaatcatcagaacttactcataatggg ttaccaaatatcgaaaccttctcggcttgtacatgtttcttcacactgcgaccatcgcgacttgatgtcgtagcaagtgc aatctatgattctaaaaaagtagtacagatatttggtctgaatgagaaagggcaaaacctagttgtcgataaagtcctca aactcaattatggattgacaccaggatccgagaaaatgcaggaagcctcaagttatatacatcagaaagtaaagaagttg aaagtgagtaccatccttcagataccattattagcaacaacatcagttatgctttggtacgagaaggaggaggtagggaa tagtttgacaagcttctacttagcgcttattcaattgctcatcagaagagctatcaatgagcaagattttgacttcggca aactgaaatgtaaacataaacaatttcaacacaatttaaatgttcttgacattccaaggtacaggacacttaaagattat gcaggagttctttgtttgttaggagaaatagcctacaataatctgatgtctgataaagaatctcttgtgtttgacaaagg ggatctccaagataggctcggtagagacacattaatttttgctttgaaagttggactattatgccagtatgaggcaccgg gttgctttgacgaagaaaatgtgagtgttcactttttccataactctgtgcaagaacttctggcagcattgtatgttgct atgactcgtgaattccagttactgtgtggaaaagtttctgatgtaaaatctatcctagaaatgtcggatttactaatttt ttcctcaggtctaagctcggttttcgcaagtgaaatttcggaacatattgtgcaaattacaaataataacagtgaaataa ggctagctagggaaacattccttgccaagcacgttaagaaacttcaattactatacttactgcaggttcgttgttaccaa gaaatgaaacattgcgagacattttgtaatggttcatctcgagcaatcgccttccatgttggagatgtatttctaccata tacttatgataatttagatattatcgaggaaaccgtggaaataatgacctaccattatggtagtaccgtttcactgtatt ttgtgaatgtaccagttgttggaagcaactgcatcaccgacaaggtgctgaacgaattcctaaggaatgcaacttctctt caatatctattaatctacggacatgtacaaagggccattaatcaaatcaacgatacaattcgtctgaaatcgttacattt atcatctgttcggctatctgatgctgcggtattagggatttttaaatccatcgaatcacagaaagagcttcgggcgctca ctcttctatctgtaccatatattgaacaagacgatgagggaatggaaatcaacatttccttgaacgacttaattgacgtt ctaccccagtgctcacaactgtacatgctcagcattaattacccaacactatatttaaacaacagaaatataaggagaac ttttctttcggtactccctcaacttcaaaatctacgccgattaatatatgacaggttttttcctttatacaatcaactag acttacgttatgacgctgccattattgaaattctgtcaaaatttccaaatctagagtacctgtacctttataatatcaga atatttccctgtgatatgcaacgtattaaccttcttttggagacaccatcattgcgatacctaaggctagatcacattcg ttttggaaatactccgattgaaattcattcactcttatcagaattgagcaaaatattcatcaactgtctggtccacttgt ccgatgagagttgggacatctacgtttcttatgtggagagatactataataataattatgacatcaatatcgaagacagt tgcgactatgagaggagccgagattcatctaactttctggtgactgttaacctggatacgcagagttggcatttcacacg acttcttcgagaagatgacgattcagtatag |
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Protein
| Protein ID | pfu_aug1.0_188.1_14872.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_188.1_14872.t1 MFASCHTEAKVHNTLMTSLCCNYLDEDSCKDRFRKFKSHCRLYLTTPREKSLSTAQDIWDCLESKGKLGVGSYETLKELT SDIDNDITELIQAAENKIDELEGRRSSKRRKTESPDCKIDHLKETLLKINNSILRKNQISPLQKGGKCISVDQLYVPVTI KEDNGYNNNPKYGSTEEQEEETKGKSISDLTEMFYQNGDPVRYIFMHGEAARGKSMYCKQLLNYWCNANQIGKCREELSE HETTLSEFDFTFLVSLRHVHQSRTLLEDMICYDTFKNNKECHDTIRHVLSSDQYRCLILVDGLDEWRISKDKSSELTHNG LPNIETFSACTCFFTLRPSRLDVVASAIYDSKKVVQIFGLNEKGQNLVVDKVLKLNYGLTPGSEKMQEASSYIHQKVKKL KVSTILQIPLLATTSVMLWYEKEEVGNSLTSFYLALIQLLIRRAINEQDFDFGKLKCKHKQFQHNLNVLDIPRYRTLKDY AGVLCLLGEIAYNNLMSDKESLVFDKGDLQDRLGRDTLIFALKVGLLCQYEAPGCFDEENVSVHFFHNSVQELLAALYVA MTREFQLLCGKVSDVKSILEMSDLLIFSSGLSSVFASEISEHIVQITNNNSEIRLARETFLAKHVKKLQLLYLLQVRCYQ EMKHCETFCNGSSRAIAFHVGDVFLPYTYDNLDIIEETVEIMTYHYGSTVSLYFVNVPVVGSNCITDKVLNEFLRNATSL QYLLIYGHVQRAINQINDTIRLKSLHLSSVRLSDAAVLGIFKSIESQKELRALTLLSVPYIEQDDEGMEINISLNDLIDV LPQCSQLYMLSINYPTLYLNNRNIRRTFLSVLPQLQNLRRLIYDRFFPLYNQLDLRYDAAIIEILSKFPNLEYLYLYNIR IFPCDMQRINLLLETPSLRYLRLDHIRFGNTPIEIHSLLSELSKIFINCLVHLSDESWDIYVSYVERYYNNNYDINIEDS CDYERSRDSSNFLVTVNLDTQSWHFTRLLREDDDSV |
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