Gene
| Gene Model ID | pfu_aug1.0_18810.1_03942 |
|---|---|
| Locus | scaffold18810.1 : 6265 ... 24625 : - |
| To GenomeBrowser | scaffold18810.1:6265..24625 |
| Genes list of scaffold | scaffold18810.1 |
| Synonym | pfu_aug2.0_757.1_24375 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18810.1_03942.t1 | 2 | 1 | TPR_11 | 61 | 125 | 1.0e-07 | 31.4 | 1.5e-09 | 7.3e-06 | 25.5 |
| pfu_aug1.0_18810.1_03942.t1 | 2 | 2 | TPR_11 | 113 | 157 | 1.0e-07 | 31.4 | 0.0011 | 5.2 | 6.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18810.1_03942.t1 | gi|50540514|ref|NP_001002722.1| | tetratricopeptide repeat protein 33 [Danio rerio] | 1.99993e-41 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_18810.1_03942.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18810.1_03942.t1 atgacatcctttggatggaaacgcaaacttggtgaaaatgtgtcccataaaaaatcaacagcatttgaagaggaggcaaa agatgaagataatgatgtcatagaaaggggagatgttgattggctgacactattaccaaatagaaaggtcatacgacttg aagatgcacaagcaaaaagtgcacgactgaaggcagaaggatccctcctagcagaatcggagagatattgggaggccatg aaaaagtgggatgaagcaatacaacttacaccaaatgatgaaactctgtatgaaatgaaagcacaggcactaattatttt gtgtgaggtgttccctgcagtaagtacggccagaaaagtgacggagttgaaaccaacatggtgggtgggacatcaaaccc ttggtagagctctgctaggacttggtgaagttagaatgtatcaaagagtcatttaccgtcatcattctgctttgtcttct atgctgttcacaagattccgtatacagatacacacacaaggtcacatgcacaacagcaatgttatggcatccctccataa cagtaccaaagggaagaaaatttga |
|
Protein
| Protein ID | pfu_aug1.0_18810.1_03942.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18810.1_03942.t1 MTSFGWKRKLGENVSHKKSTAFEEEAKDEDNDVIERGDVDWLTLLPNRKVIRLEDAQAKSARLKAEGSLLAESERYWEAM KKWDEAIQLTPNDETLYEMKAQALIILCEVFPAVSTARKVTELKPTWWVGHQTLGRALLGLGEVRMYQRVIYRHHSALSS MLFTRFRIQIHTQGHMHNSNVMASLHNSTKGKKI |
|