Gene
| Gene Model ID | pfu_aug1.0_1893.1_58683 |
|---|---|
| Locus | scaffold1893.1 : 53556 ... 72964 : + |
| To GenomeBrowser | scaffold1893.1:53556..72964 |
| Genes list of scaffold | scaffold1893.1 |
| Synonym | pfu_aug2.0_55.1_16814 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1893.1_58683.t1 | 1 | 1 | zf-CCHC | 370 | 386 | 7.0e-06 | 25.7 | 8.0e-09 | 1.5e-05 | 24.6 |
| pfu_aug1.0_1893.1_58683.t1 | 1 | 1 | gag-asp_proteas | 415 | 453 | 3.9e-07 | 29.8 | 5.3e-10 | 9.8e-07 | 28.5 |
| pfu_aug1.0_1893.1_58683.t1 | 1 | 1 | Asp_protease | 419 | 516 | 3.4e-07 | 29.8 | 4.7e-10 | 8.8e-07 | 28.5 |
| pfu_aug1.0_1893.1_58683.t1 | 2 | 1 | Asp_protease_2 | 421 | 508 | 1.8e-13 | 50.7 | 9.6e-16 | 1.8e-12 | 47.5 |
| pfu_aug1.0_1893.1_58683.t1 | 1 | 1 | RVP | 421 | 516 | 1.9e-07 | 30.9 | 2.8e-10 | 5.2e-07 | 29.5 |
| pfu_aug1.0_1893.1_58683.t1 | 2 | 2 | Asp_protease_2 | 515 | 592 | 1.8e-13 | 50.7 | 0.8 | 1500.0 | -0.3 |
Transcript
| Transcript ID | pfu_aug1.0_1893.1_58683.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1893.1_58683.t1 atggagttttttaaaggaatggtgaagggcatgaaggaagattttgcgtcatttttagagacatcagagaggaggatatc gatgctggcagctccaaagtttacttctactcctttgtctagcagtgctgacgagtacagactacctcctccaatccaac aaactcaaatgcgtgaaccaaatgaaggggtagcaaaaactccaacaagaactgctgtcaggccaaaaacaaatacaggt gcagtaagtggtagaccatttgatcaagagctgcgggtaatagagcaaagagaagcaaacagacagctatcatacactcc agatggttccactcagacaggaaacattggaaatagaggcacaatatttgaacatcaatcagttgcatggcctagcgcaa aattaccaacatttgagggaaaggatgagttcgacgttttcatagttcctttcgaacgaatggcccaaaggtataaatgg acagagcaagagaaaatcgacaaaatatatgagtgtttaaaaggaaaggccatgtggtttttatgctctcttcccaaaga catactgagaaattactcgtcaattcgcgaaagtctcattaaaagatttggcagaaaggaccctccggccacagtccgaa gaaagctaaatgaaattcgccaaaaactagagagtaacgaggagttcggagaagagataaggagacttgtgacaagggcc tatcctggtgtagatctagcaatgcaggatcaacttgctgctgagtcatttttaaagggctacaagaatgcaaagattga ttacgatgtactaaacaagaaacccgtgactctgaatgaagccattgaacttgtgactttccaagagcacaattataggg ctacagttggtcgagaagggaacatgcgtcgcatgagttaccaggacttgagcgacgatgattttgatagagagataaga gtcagcagggtgagccaaccaacttacttgaccttggataaattggacgaacgcttgaaagaattggaagtgcgttttac aatggaacaagaaaagagaatggaaagaatagaaaagctgtttggctcaagaaatgaggtcaagggaagctgtttccaat gcaatgagcctgggcatttcgcaaaggattgcactaaaagagcaaggtcaccaagtccaaagccccaaactcgcagtagc tcgtcagagaaaaggaatgtccgtgtcactcgtatactcaaccaaggaggggctttaagtgttccggtcgagataaatgg tacactgacacatgccattattgatactggagcagatgcaactatcatttcaaaggaagttgctgaaaaagcaggtcttg tcccagataaatctgagagttttcgtttactcaatgccacaaatggatctgaattggatgccattggagctgtcactgcg acaatccaactggcaaagcgtccatacaaatgggactttgtagttgcaccaaccagagatccagtcctactggggatgga ttttatgaaagctattaatgcaaccatccatacagggagagggacagtaatcatcaatgatgatgccattatttcaggta ctttgaccgaggaaaatgaggagccatatgtttgtggcattgttcaggcacaaaatggtgtcactgaacagatcatgata ggaagagttgaaggccctgtgccaaacgagcaagttgtaataggcaaaacagcccaaccaaaagatgggcaagtatacgt aggattactaggacagccccctgatgcagaagttagggaagatgaattagaagctatttataaggaggcaaatttctttc aggaacatcgtatggaaactgatattagaagtgatagctgtgacatggtactgcccggcaatgtaaaaaaggtgtataac ttgcattcctttggaaacagatatgctcctggagacctaattgtgcacattcccaaactacacccagccaggagcaagcc acttgaattacagagaatgtggtgttatccatttatgcttacacaacaacagggaccagtctgttatgaagtcggaacca acggcaagaccatgatgactattcatcatgaccatctcaaactgttcaagtctgactcaccttgtcctgtcactgactgt ccctttgaatgcgccactgttgcaagagtaacgacatgtagagaattattccttagtaccggagaactcaatgatcaagc catccataaattcataccagaacaagatttaaggataaaggcatcaagtttttatagacaactacaaggtgcttatggta agtacaatttcatctttaaaacttttgataaagagaacgggaccgaaataaccacagttctagatgagagtaaaatgtca tgtgataatgttcagaacttgttgctgtcacttgccaaagcaaatcaggatgttgtgagaaaccttgtaaccatggcaac agggaatataaccggaaacatggacccggtaacaatcctggatagcatacctgaaatcttctttaattacgttaaggtca gtatgtatatgaccgcacgaattgaagtattacgccttcaacgacgaaaatgtagcagtttgcatggtgccatcaaaaac atggccctgcataaagttatggaaatgttaaggggtcctaatttccgacagttacaaagttcatctaaacagaacgtggt caatctggttaaagagtgcggtggaagctacacggctttggaaaaatatgtaccagataaaacactggtcctatttgctg ctgtgattgattcgtctcatcatgttctatcagcattgaatatttcaagttctgctcccaccagttttctaaaaaaacga cttgaacgcaaaacttaa |
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Protein
| Protein ID | pfu_aug1.0_1893.1_58683.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1893.1_58683.t1 MEFFKGMVKGMKEDFASFLETSERRISMLAAPKFTSTPLSSSADEYRLPPPIQQTQMREPNEGVAKTPTRTAVRPKTNTG AVSGRPFDQELRVIEQREANRQLSYTPDGSTQTGNIGNRGTIFEHQSVAWPSAKLPTFEGKDEFDVFIVPFERMAQRYKW TEQEKIDKIYECLKGKAMWFLCSLPKDILRNYSSIRESLIKRFGRKDPPATVRRKLNEIRQKLESNEEFGEEIRRLVTRA YPGVDLAMQDQLAAESFLKGYKNAKIDYDVLNKKPVTLNEAIELVTFQEHNYRATVGREGNMRRMSYQDLSDDDFDREIR VSRVSQPTYLTLDKLDERLKELEVRFTMEQEKRMERIEKLFGSRNEVKGSCFQCNEPGHFAKDCTKRARSPSPKPQTRSS SSEKRNVRVTRILNQGGALSVPVEINGTLTHAIIDTGADATIISKEVAEKAGLVPDKSESFRLLNATNGSELDAIGAVTA TIQLAKRPYKWDFVVAPTRDPVLLGMDFMKAINATIHTGRGTVIINDDAIISGTLTEENEEPYVCGIVQAQNGVTEQIMI GRVEGPVPNEQVVIGKTAQPKDGQVYVGLLGQPPDAEVREDELEAIYKEANFFQEHRMETDIRSDSCDMVLPGNVKKVYN LHSFGNRYAPGDLIVHIPKLHPARSKPLELQRMWCYPFMLTQQQGPVCYEVGTNGKTMMTIHHDHLKLFKSDSPCPVTDC PFECATVARVTTCRELFLSTGELNDQAIHKFIPEQDLRIKASSFYRQLQGAYGKYNFIFKTFDKENGTEITTVLDESKMS CDNVQNLLLSLAKANQDVVRNLVTMATGNITGNMDPVTILDSIPEIFFNYVKVSMYMTARIEVLRLQRRKCSSLHGAIKN MALHKVMEMLRGPNFRQLQSSSKQNVVNLVKECGGSYTALEKYVPDKTLVLFAAVIDSSHHVLSALNISSSAPTSFLKKR LERKT |
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