Gene
| Gene Model ID | pfu_aug1.0_1894.1_22783 |
|---|---|
| Locus | scaffold1894.1 : 6586 ... 17523 : + |
| To GenomeBrowser | scaffold1894.1:6586..17523 |
| Genes list of scaffold | scaffold1894.1 |
| Synonym | pfu_aug2.0_1668.1_28452 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1894.1_22783.t1 | 5 | 1 | RCC1 | 4 | 30 | 6.9e-27 | 93.4 | 0.00076 | 5.6 | 7.2 |
| pfu_aug1.0_1894.1_22783.t1 | 4 | 1 | RCC1_2 | 17 | 50 | 7.3e-17 | 60.5 | 6.4e-05 | 0.48 | 10.1 |
| pfu_aug1.0_1894.1_22783.t1 | 5 | 2 | RCC1 | 39 | 98 | 6.9e-27 | 93.4 | 3.3e-05 | 0.25 | 11.5 |
| pfu_aug1.0_1894.1_22783.t1 | 4 | 2 | RCC1_2 | 87 | 114 | 7.3e-17 | 60.5 | 6.5e-09 | 4.8e-05 | 22.8 |
| pfu_aug1.0_1894.1_22783.t1 | 5 | 3 | RCC1 | 103 | 153 | 6.9e-27 | 93.4 | 1.8e-07 | 0.0013 | 18.8 |
| pfu_aug1.0_1894.1_22783.t1 | 4 | 3 | RCC1_2 | 141 | 170 | 7.3e-17 | 60.5 | 2.3e-09 | 1.7e-05 | 24.2 |
| pfu_aug1.0_1894.1_22783.t1 | 5 | 4 | RCC1 | 157 | 207 | 6.9e-27 | 93.4 | 2.6e-09 | 1.9e-05 | 24.7 |
| pfu_aug1.0_1894.1_22783.t1 | 4 | 4 | RCC1_2 | 194 | 223 | 7.3e-17 | 60.5 | 4.3e-06 | 0.032 | 13.8 |
| pfu_aug1.0_1894.1_22783.t1 | 5 | 5 | RCC1 | 210 | 255 | 6.9e-27 | 93.4 | 7.5e-09 | 5.5e-05 | 23.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1894.1_22783.t1 | gi|260804625|ref|XP_002597188.1| | hypothetical protein BRAFLDRAFT_276208 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1894.1_22783.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1894.1_22783.t1 atgaggcgaccttccagattgcggttcatggacgaaaataacctagaggtcaaggacgttgactgcggttatggttttac gctaatgatatgtaaggaaggaggtaagggacttcaactttacgggacggggattaatacagactctcagttaggatttc atgaatatccaaagaatactggtagatttctggattatattattcagcctgtacctataaaattgccgctacacactcca gattccaccaagttgttggccgtcgcaggcggcagggcacacactttggtgcttacagacacagaaggtgtcttcagtct tggaaacaattcatatggacagtgcggaagacctattgtggagggagaatggtatcgtggaagtgacatcatccatagaa tacggcaccttccctacggtatcgaggatattgtttgcggtcaggatcattcttttttcatgacaacttctggtgaaatc tatagctgtggtcttggcgcagatggacagactggtctggaacattacaaactgacacacgaaccaacgctagtgaaggg agatatacaaggcgaaaaaatcatacaggtctcatcaagtgccgattgtgttttagcagtgtctgataagggggatgtgt ttggatggggaaattcagaatatcatcaatttgcatctatcactgaggaaacgcaagtcaacgttccccgtcatatgaat acaaagcattgtgggaagataatccaggtggcagcagcaggatcaaagtgcgcaattctaaagagaaaggacaggtttac gtttggggatttggcatactcggaaagggacctaaactttatacagcatctgttccagagatga |
|
Protein
| Protein ID | pfu_aug1.0_1894.1_22783.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1894.1_22783.t1 MRRPSRLRFMDENNLEVKDVDCGYGFTLMICKEGGKGLQLYGTGINTDSQLGFHEYPKNTGRFLDYIIQPVPIKLPLHTP DSTKLLAVAGGRAHTLVLTDTEGVFSLGNNSYGQCGRPIVEGEWYRGSDIIHRIRHLPYGIEDIVCGQDHSFFMTTSGEI YSCGLGADGQTGLEHYKLTHEPTLVKGDIQGEKIIQVSSSADCVLAVSDKGDVFGWGNSEYHQFASITEETQVNVPRHMN TKHCGKIIQVAAAGSKCAILKRKDRFTFGDLAYSERDLNFIQHLFQR |
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