Gene
| Gene Model ID | pfu_aug1.0_19.1_57913 |
|---|---|
| Locus | scaffold19.1 : 79221 ... 94235 : - |
| To GenomeBrowser | scaffold19.1:79221..94235 |
| Genes list of scaffold | scaffold19.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_19.1_57913.t1 | 2 | 1 | PRMT5 | 45 | 121 | 6.7e-11 | 41.7 | 0.21 | 210.0 | 0.6 |
| pfu_aug1.0_19.1_57913.t1 | 3 | 1 | MTS | 48 | 120 | 2.4e-09 | 36.7 | 5.0e-10 | 5.0e-07 | 29.2 |
| pfu_aug1.0_19.1_57913.t1 | 3 | 1 | Methyltransf_31 | 51 | 114 | 1.8e-10 | 40.6 | 1.4e-10 | 1.4e-07 | 31.2 |
| pfu_aug1.0_19.1_57913.t1 | 1 | 1 | Methyltransf_18 | 53 | 275 | 1.7e-08 | 35.0 | 4.3e-09 | 4.2e-06 | 27.3 |
| pfu_aug1.0_19.1_57913.t1 | 3 | 2 | Methyltransf_31 | 129 | 186 | 1.8e-10 | 40.6 | 0.027 | 27.0 | 4.3 |
| pfu_aug1.0_19.1_57913.t1 | 3 | 2 | MTS | 130 | 177 | 2.4e-09 | 36.7 | 0.33 | 330.0 | 0.5 |
| pfu_aug1.0_19.1_57913.t1 | 3 | 3 | MTS | 188 | 277 | 2.4e-09 | 36.7 | 0.0023 | 2.3 | 7.5 |
| pfu_aug1.0_19.1_57913.t1 | 2 | 2 | PRMT5 | 201 | 434 | 6.7e-11 | 41.7 | 4.0e-13 | 3.9e-10 | 39.2 |
| pfu_aug1.0_19.1_57913.t1 | 3 | 3 | Methyltransf_31 | 215 | 247 | 1.8e-10 | 40.6 | 0.0021 | 2.1 | 7.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_19.1_57913.t1 | gi|260807553|ref|XP_002598573.1| | hypothetical protein BRAFLDRAFT_66964 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_19.1_57913.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19.1_57913.t1 atgatgcgaaagcggtcttacgacgacgacaacacaatgatacgatgctcgaaaaacacaaacttagatgaagacttcga gcgcttgcttcctgtagtgttatgtgaaattcattgcagtatgtttgcagaggagtcgaaaatgcgtcagcaaatcacta gaatcttggatgtgggctgtggtaccggtattttgagtctgatgtgtgccaagtacgcccagccatctaaggtgatagtt gtagaagccagtgatatagctataaacacagcagatattgtgaagtgtaacggttatgatgatgttataacagtatataa tgattacatagaggagttatgttacactatgcaacttgatgttacacgatgttaccttatttcacaggtgatagctgtag aggccagtgatatagctataaacacagaagatattgtaaagtgtaatggttatgacgatgttataacggtacatgatgat tacaaagaggagctacgttacacgatgcaacttgatgttacactatgtaacctaattttacagatgatagctgtacaggc cagtgatacatgtaaagctgtagacatggcagatattgtgatagctgtagaggctagtgatatagctgaggacacagcag atattgttaagtgtaacggttatgacgatgttataacggtacataatgattacgtggaggaattgaatttgcaggacaaa gtggacgttataatatcagaatggatgggaacagctttattgtttgagatgatgattgaatcagtgataatagccagaga taaatacctaaatcctaacggaaaaatgtggccatctattgcaagtctatatttagttccttgctcgtcacatgatcagc accataaaaatattgcattctgggaagaccagtatggattttccttctcccctctgatagccaaaagtaagtcagatgta atacacaagcctatatataatcacgtgttagttgtaaacgattgtctgtcagaggagaagtgtatactgacactggatat gagtgaagtgacggtatcagagttagagagtaacgtttgtgattttaccttcactgtgactaaggacgatgtattacatg gattttgttcctggttccaagttgattttatcggttatgaaaatagagaaagagtgatcctcaatacaggtcctaaacat gacctcactcattggaagcagaatttatttctattagataataaacattccgtcagcaaaggcgatattgtatcgggacg tttccatatttaccgtaatgaggaatggaggaggcatctacgagtcaagatatcatttactatttctaaggacgatgtaa aagtgctttacgagaactgtaatgacactttcaatattatgacgtcatcaagaaattcacgaaaacgtcgattaatgcat atttcaaagtctcgtagaaaattttcctgtggatag |
|
Protein
| Protein ID | pfu_aug1.0_19.1_57913.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19.1_57913.t1 MMRKRSYDDDNTMIRCSKNTNLDEDFERLLPVVLCEIHCSMFAEESKMRQQITRILDVGCGTGILSLMCAKYAQPSKVIV VEASDIAINTADIVKCNGYDDVITVYNDYIEELCYTMQLDVTRCYLISQVIAVEASDIAINTEDIVKCNGYDDVITVHDD YKEELRYTMQLDVTLCNLILQMIAVQASDTCKAVDMADIVIAVEASDIAEDTADIVKCNGYDDVITVHNDYVEELNLQDK VDVIISEWMGTALLFEMMIESVIIARDKYLNPNGKMWPSIASLYLVPCSSHDQHHKNIAFWEDQYGFSFSPLIAKSKSDV IHKPIYNHVLVVNDCLSEEKCILTLDMSEVTVSELESNVCDFTFTVTKDDVLHGFCSWFQVDFIGYENRERVILNTGPKH DLTHWKQNLFLLDNKHSVSKGDIVSGRFHIYRNEEWRRHLRVKISFTISKDDVKVLYENCNDTFNIMTSSRNSRKRRLMH ISKSRRKFSCG |
|