Gene
| Gene Model ID | pfu_aug1.0_1936.1_00902 |
|---|---|
| Locus | scaffold1936.1 : 25434 ... 55675 : - |
| To GenomeBrowser | scaffold1936.1:25434..55675 |
| Genes list of scaffold | scaffold1936.1 |
| Synonym | NA |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | tachykinin receptor-like |
| Description | Similar (40%) to XP_002741579.1| PREDICTED: tachykinin receptor-like protein-like [Saccoglossus kowalevskii |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1936.1_00902.t1 | 1 | 1 | 7TM_GPCR_Srsx | 80 | 358 | 9.6e-13 | 47.8 | 2.8e-16 | 1.4e-12 | 47.3 |
| pfu_aug1.0_1936.1_00902.t1 | 1 | 1 | 7tm_1 | 84 | 344 | 0.0 | 193.5 | 0.0 | 0.0 | 193.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1936.1_00902.t1 | gi|291243381|ref|XP_002741579.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1936.1_00902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1936.1_00902.t1 atgacagagtatgtgaatgacttcagtaattcattgacagttatggaaatcttaccgatacgtaaaaataaaagtattat tttccccttacacttttttgtgaacagttcttccaatatgacttatgtcaatttaagtgatgattttccaaatcaaaatt ctagtgagatgctgcacgtgtcgctgtcacaggaatctttatcaggacttatggtactatatactctaacaacgcttttg tccattagtggaaatatttttgtcgttcttgtttttaccaaaggtcgacattcccggaccgatctccgaccattcctgat taatctggcggtagcagaccttgtcatggcctttttctgtatgcctttcacctttgccgacacaatcatggggcggtggg ttttccccagacctttgtgcaccttagttttgttcgtgcaactttttgccgtcgcggccagtgttttgacaaatatggca atcggaatagaccgcttcttagcagtgacatttccactgagatctcgtgtgacttactctcgctcaaaatacgtcatagc tgtaatatggacgtcatcatttgctttagccgcggtacaattttttgtaggtcgcgcagaaaactttggcgacgttgtaa aatgtatagaagattggccgaacgctggatcacgaagaatatataccattgttttattactctgtacatatattgttcct gttattattctttcaataacatattcaattgttggaattttattatggaagcggaccgctccaggaaatcaagatcatgt gagggatttaaacagactgaggtctaaaatcagaattgtgcgtatgttggtgatagtggtggcagtgtttggaatatgct ggttaccaatccatgtttttactcttattttggatttcaatccagaaatcatgcagccaaaaaccgaggacgaggctatg aacttgaccacaatctttctctgcgttcattggctggcaatgtccaatagctttgctaatccaataatatatggattcac taacgaaaattttagagcggacttggccacgctattttacatgtggtgtccgtgttgtgactgtctccagaaagtgatgc cccgttcactcagtacatcgactcacgagagtgtcatcttacgtcaaagcacgtttcgtcacactcgccatggaatggct gccagaaacatgtcgcgctacctaacgacagacaggtgcgtcacgggacataaccgatacttgtctttgcgacaaagtag caaggaaagtacaacggatgagtga |
|
Protein
| Protein ID | pfu_aug1.0_1936.1_00902.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1936.1_00902.t1 MTEYVNDFSNSLTVMEILPIRKNKSIIFPLHFFVNSSSNMTYVNLSDDFPNQNSSEMLHVSLSQESLSGLMVLYTLTTLL SISGNIFVVLVFTKGRHSRTDLRPFLINLAVADLVMAFFCMPFTFADTIMGRWVFPRPLCTLVLFVQLFAVAASVLTNMA IGIDRFLAVTFPLRSRVTYSRSKYVIAVIWTSSFALAAVQFFVGRAENFGDVVKCIEDWPNAGSRRIYTIVLLLCTYIVP VIILSITYSIVGILLWKRTAPGNQDHVRDLNRLRSKIRIVRMLVIVVAVFGICWLPIHVFTLILDFNPEIMQPKTEDEAM NLTTIFLCVHWLAMSNSFANPIIYGFTNENFRADLATLFYMWCPCCDCLQKVMPRSLSTSTHESVILRQSTFRHTRHGMA ARNMSRYLTTDRCVTGHNRYLSLRQSSKESTTDE |
|