Gene
| Gene Model ID | pfu_aug1.0_1938.1_00904 |
|---|---|
| Locus | scaffold1938.1 : 22716 ... 31282 : + |
| To GenomeBrowser | scaffold1938.1:22716..31282 |
| Genes list of scaffold | scaffold1938.1 |
| Synonym | pfu_aug2.0_243.1_10496 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1938.1_00904.t1 | 1 | 1 | F420_oxidored | 7 | 102 | 4.2e-18 | 65.5 | 3.7e-21 | 9.1e-18 | 64.4 |
| pfu_aug1.0_1938.1_00904.t1 | 1 | 1 | P5CR_dimer | 165 | 267 | 5.7e-28 | 97.0 | 6.3e-31 | 1.6e-27 | 95.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1938.1_00904.t1 | gi|72044651|ref|XP_788839.1| | PREDICTED: pyrroline-5-carboxylate reductase 1, mitochondrial [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1938.1_00904.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1938.1_00904.t1 atggacctctcaaaaatcaagctgggatttctaggagctggtcatttcgctcattcgctgatcaaatcattcatagatgc aggtacactgaaacctgaccaaattatttgcagtaaccgatctcagacaaatctaacaaaaataaaggagcttggagttg cgtctgtaaccacatcacatgatgaaatggtacttaagtgtgacgtcatcgtcatctgtatccatcctaaggcagtggtt gacgtcctccgcagtttgtcccattgttgggaccagccgaaattggtggtatctgtggcggctggcgttaccatagcatc aatggaagaggtattacctacaaattatcggattatacggatcctgcctaacttgccgtcgatggtacgtgctggagctt ccctattttccccgggaacacgagccactgacgatgacaaccgaattgtgaaggaactgttctcagctgtaggtacttgt gacatggggaaggaagacgatatagacgtggcatcagttctggttgtcccattatttggttacttagtgatagaatccat ggcggatggagctgtaaagatgggactaccacggaatctggcaacgaaaatggctgctcagtctttgttgggctcagcga aacttctccttgaaagtgggaaaacaccgggtcagctgaaagaggaggtgtgctcaccaggaggggttaccgtgacaacg ctacattctctagaacaagacggaattagagctaccatcatgaatgccatagaaaagggaacactccgggctaaacggat gggagacaaataa |
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Protein
| Protein ID | pfu_aug1.0_1938.1_00904.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1938.1_00904.t1 MDLSKIKLGFLGAGHFAHSLIKSFIDAGTLKPDQIICSNRSQTNLTKIKELGVASVTTSHDEMVLKCDVIVICIHPKAVV DVLRSLSHCWDQPKLVVSVAAGVTIASMEEVLPTNYRIIRILPNLPSMVRAGASLFSPGTRATDDDNRIVKELFSAVGTC DMGKEDDIDVASVLVVPLFGYLVIESMADGAVKMGLPRNLATKMAAQSLLGSAKLLLESGKTPGQLKEEVCSPGGVTVTT LHSLEQDGIRATIMNAIEKGTLRAKRMGDK |
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