Gene
| Gene Model ID | pfu_aug1.0_1938.1_00905 |
|---|---|
| Locus | scaffold1938.1 : 31319 ... 41995 : - |
| To GenomeBrowser | scaffold1938.1:31319..41995 |
| Genes list of scaffold | scaffold1938.1 |
| Synonym | pfu_aug2.0_243.1_10497 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1938.1_00905.t1 | 2 | 1 | ScpA_ScpB | 160 | 180 | 1.3e-06 | 28.1 | 0.42 | 2100.0 | -2.0 |
| pfu_aug1.0_1938.1_00905.t1 | 2 | 2 | ScpA_ScpB | 322 | 391 | 1.3e-06 | 28.1 | 2.6e-10 | 1.3e-06 | 28.1 |
| pfu_aug1.0_1938.1_00905.t1 | 1 | 1 | Rad21_Rec8 | 345 | 396 | 3.7e-14 | 51.6 | 1.6e-17 | 8.0e-14 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1938.1_00905.t1 | gi|113681742|ref|NP_001038585.1| | double-strand-break repair protein rad21 homolog [Danio rerio] | 5.60519e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1938.1_00905.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1938.1_00905.t1 atgtccgagtcaacatctcttggtgttgttttacataatgacatcactgttacaaagacgtcccattatacagagaagaa tgaacaaagtacagtttcaagtgtttccgagaccactcagccaaccatgatcactgctggagccacagaacaaaccacac tcatcagtaatgaggaggaagcctttgctctcccccctcttgacacaactcatgtctcgggtctacatggaacggaaaag aaaggaaaacgaaaaaggaaactgattgttgatgaacaaaaaggaattccgagtgaaacaatgaaactccagctgtcgga cacgtcagatattatatccacattagacttggctccacccacaaagaaactgatgcaatggaaggaatctgggggtgtgg aaaaattgtttgggttaccaggacgatctattgtatcaaaatcagtctcaaagcttttcacaagaaatctccacacaagg gcagtaacagaagaagaggatgaacaagacaagttggatctggaggcaaccgatatatctaatgctgaggaagcaagatc taaagacaaatcatatgcaccacctcaggaaatcagcacgatatacgaggaaccgtctacgatggaaacgtccaagaggt caagtcgcagcgataagagtctgatgaaatcaccgcttcatatacctgcaccagaaccaaataaatccgtacaagaccag tcggctcaagatctgtttaataactttaccgagggagtaccagatatttctctggacccctctatgcagcaacctaatat cgatccttatgagacggaacctccatcaatagcccccttctcagtgccacctccaagtgttccccctccgtcagtccctc ctgttcatataccggacgaagctataacattcaatgcagaaccggaattagacacagatcagatgccagaaaatcaagaa caagaagaaaaacagttaacaaaacggagtcaggttatgcaacattctttggatgtggcattcagatacaaagatgaact cagtttcaaagagatgtctcgttgcttaaatcgcaagcaggctgcatctaaattttatactctcctcgttctgaaaaaag ctcaggccatagaagttcgacaaccagaagaatttggtgacatttacataaacaaaggaccacagtttggcttgttgtga |
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Protein
| Protein ID | pfu_aug1.0_1938.1_00905.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1938.1_00905.t1 MSESTSLGVVLHNDITVTKTSHYTEKNEQSTVSSVSETTQPTMITAGATEQTTLISNEEEAFALPPLDTTHVSGLHGTEK KGKRKRKLIVDEQKGIPSETMKLQLSDTSDIISTLDLAPPTKKLMQWKESGGVEKLFGLPGRSIVSKSVSKLFTRNLHTR AVTEEEDEQDKLDLEATDISNAEEARSKDKSYAPPQEISTIYEEPSTMETSKRSSRSDKSLMKSPLHIPAPEPNKSVQDQ SAQDLFNNFTEGVPDISLDPSMQQPNIDPYETEPPSIAPFSVPPPSVPPPSVPPVHIPDEAITFNAEPELDTDQMPENQE QEEKQLTKRSQVMQHSLDVAFRYKDELSFKEMSRCLNRKQAASKFYTLLVLKKAQAIEVRQPEEFGDIYINKGPQFGLL |
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