Gene
| Gene Model ID | pfu_aug1.0_1941.1_44193 |
|---|---|
| Locus | scaffold1941.1 : 1 ... 11014 : + |
| To GenomeBrowser | scaffold1941.1:1..11014 |
| Genes list of scaffold | scaffold1941.1 |
| Synonym | pfu_aug2.0_87.1_23415 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1941.1_44193.t1 | 5 | 1 | WD40 | 50 | 69 | 5.6e-30 | 102.1 | 0.26 | 2000.0 | -1.1 |
| pfu_aug1.0_1941.1_44193.t1 | 5 | 2 | WD40 | 100 | 128 | 5.6e-30 | 102.1 | 3.5e-06 | 0.026 | 14.4 |
| pfu_aug1.0_1941.1_44193.t1 | 1 | 1 | DUF4371 | 131 | 244 | 5.3e-10 | 39.2 | 1.3e-13 | 9.8e-10 | 38.3 |
| pfu_aug1.0_1941.1_44193.t1 | 5 | 3 | WD40 | 580 | 616 | 5.6e-30 | 102.1 | 2.0e-12 | 1.5e-08 | 34.2 |
| pfu_aug1.0_1941.1_44193.t1 | 5 | 4 | WD40 | 624 | 660 | 5.6e-30 | 102.1 | 1.1e-09 | 8.3e-06 | 25.4 |
| pfu_aug1.0_1941.1_44193.t1 | 5 | 5 | WD40 | 680 | 716 | 5.6e-30 | 102.1 | 7.3e-09 | 5.4e-05 | 22.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1941.1_44193.t1 | gi|66534191|ref|XP_624580.1| | PREDICTED: probable histone-binding protein Caf1 [Apis mellifera] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1941.1_44193.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1941.1_44193.t1 gtccgaggagcagaatcacctattaatagccagcgtgcagctaccaaatgataatgcacaatttgatgcctcacattatg atagtgagaaaggagaatttggtggatttgggtcagttagcggtaaaattgagattgaaatcaaaataaaccatgaaggg gaggtaaacagagctcgttacatgccccagaatccttgtattatcgctacaaaaaccccatcgagcgacgtcctggtgtt tgactatacaaaacatccctcgaaaccagacccaagtggagagtgtgcaccagagctaaggttaaaaggtcatcaaaaag aagggtacggattatcgtggaatccaaatcttaatggacatttattaagtgcttctgatgaccatggaagtaaactaatg tacgagcatcacgaatccgtgcgtgaaatgcaaaacgcaatggccaaagtcgtacaagatgacctcttagatgacattaa aaattctgctgtgtattcaatcatggcggacgagtctacagacgtttcaactgaaaaaacattaatgttgtatgtcagat acattaaaaatggtgcacctaaagttagctttttagaagtcgtagaattggcaggggatgaatgcaactcggaaaacatt tgcaatactattctgagagtacttgaacaacgcaatctttgtgtaacaaatttatcgtgcataacgacagacggagcaag tgttatgacgggttgcaggtcaggggtcacaactttaatgaaggagaaaaactgtcaactgctttcaattcactgcattg cacatcgcctggctctcgcttctggacaagcagcagacaacatcccatatttaaagaaatatcaacatatggtaaacacg atctacaaatacttcaaatactcgccgaaacatttaggaaaactgaagaaaatgcagtcagttctggaaatgagtgaaat taaatttaaacaaacttttgcaacaagatggttgtcctttgagggtgcagttgacgcaatcatcacaaattatgatgctt tagttatgtgtttggaacaagaagtcgccgaagacgatgaccatacagcacgtggcctccttatttttataacggattac ttgttcctggcaacctcctacttcttgagcgacgtacttacacatttgtctacgctcagtaaaatttttcaaaaatcaga gttggatatagggtcctttgcattatcaacatcgtcaacattggcctctataacacagttagagaatagtgacgggctca gtgagcgtgaattcaaaagcaaactgccctcgaattttactcagggttttgaatttgggccaagcaaacatcacataaaa tgttcggatgcaaatgtagaccgtttcatcaaggcaaggaatgactacctccgtgttctccttggaaatttgaaagcacg tttccaagacaatcaaattatacagtgcttctctgtgttaacaccaagcagtttaccagagtcattggaggatttttttg tctatggaaacgatgaaataaggaagcttggtgatctgtacagtaatgacaaacagaaaacttcaaagcttggcattgac aagaaaacactttgtgcagaatggccaatgtttaaacatacaatgcaaacaaaattttctcagtgcaaattctcagaaat ggcaaagctatttcttaatgatagctgggacacacggtctaacaacacaaacaaagcaagtcatacagtggatgcacaca cagccgaggttaactgcctgtcattcaacccctacagcgagtttatcctggcaacaggctcagctgacaagactgttgca ttatgggacttaaggaatctcaagttaaaacttcactcatttgaatcacataaagatgaaattttccaggttcagtggtc acctcacaatgagactatcctggcttctagtggtacagaccgcagacttcatgtttgggatctcagcaaaataggtgagg agcaatcagcagaagatgctgaggatggccccccagaattactgtttatccatggtggtcatacagcaaagatttccgac ttctcatggaaccccaatgaaccctgggtaatatgctctgtatcagaggacaacatcatgcaggtttggcaaatggctga gaatatttacaatgatgaagaaccagacaccccgtcacaagacttggaagctggaggatcttaa |
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Protein
| Protein ID | pfu_aug1.0_1941.1_44193.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1941.1_44193.t1 SEEQNHLLIASVQLPNDNAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVF DYTKHPSKPDPSGECAPELRLKGHQKEGYGLSWNPNLNGHLLSASDDHGSKLMYEHHESVREMQNAMAKVVQDDLLDDIK NSAVYSIMADESTDVSTEKTLMLYVRYIKNGAPKVSFLEVVELAGDECNSENICNTILRVLEQRNLCVTNLSCITTDGAS VMTGCRSGVTTLMKEKNCQLLSIHCIAHRLALASGQAADNIPYLKKYQHMVNTIYKYFKYSPKHLGKLKKMQSVLEMSEI KFKQTFATRWLSFEGAVDAIITNYDALVMCLEQEVAEDDDHTARGLLIFITDYLFLATSYFLSDVLTHLSTLSKIFQKSE LDIGSFALSTSSTLASITQLENSDGLSEREFKSKLPSNFTQGFEFGPSKHHIKCSDANVDRFIKARNDYLRVLLGNLKAR FQDNQIIQCFSVLTPSSLPESLEDFFVYGNDEIRKLGDLYSNDKQKTSKLGIDKKTLCAEWPMFKHTMQTKFSQCKFSEM AKLFLNDSWDTRSNNTNKASHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS PHNETILASSGTDRRLHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE NIYNDEEPDTPSQDLEAGGS |
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