Gene
| Gene Model ID | pfu_aug1.0_19570.1_11235 |
|---|---|
| Locus | scaffold19570.1 : 14433 ... 23175 : - |
| To GenomeBrowser | scaffold19570.1:14433..23175 |
| Genes list of scaffold | scaffold19570.1 |
| Synonym | pfu_aug2.0_711.1_04512 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_19570.1_11235.t1 | 4 | 1 | Trichoplein | 71 | 82 | 7.1e-35 | 120.0 | 0.079 | 1200.0 | -2.4 |
| pfu_aug1.0_19570.1_11235.t1 | 4 | 2 | Trichoplein | 126 | 174 | 7.1e-35 | 120.0 | 0.62 | 9200.0 | -5.4 |
| pfu_aug1.0_19570.1_11235.t1 | 4 | 3 | Trichoplein | 198 | 324 | 7.1e-35 | 120.0 | 5.3e-31 | 7.9e-27 | 93.5 |
| pfu_aug1.0_19570.1_11235.t1 | 4 | 4 | Trichoplein | 331 | 416 | 7.1e-35 | 120.0 | 7.9e-15 | 1.2e-10 | 40.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_19570.1_11235.t1 | gi|198422768|ref|XP_002127322.1| | PREDICTED: coiled-coil domain-containing protein 19, mitochondrial-like [Ciona intestinalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_19570.1_11235.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19570.1_11235.t1 atgcctggcagtgcaatttctgcggcaggaagttctgcctcatcatcttcatcaaaacgaggcaaaactcgtaattatcg agttgttagtaacacatcacaggtagatgaatccctttttggacagcctaaccatgtgcagcaaaggggtgaaattctta aagataaatttgacattaatgacaatgaagtaacaatagaagatttagctagagagagaagtgcaaaaaggaaaaacaga aagaaaagtaataacagtggaaaggaaacagttcaagtaatcacaaaagatttgatcagaaatctcatagtacccactga agacccttcaggccagtcaataatcctgcccagacatgaatttcacagaattgtaatggaagcccaggtcaaaactaagg aacaaagagaaatggagatagaagcctacaaaagacagaagcaagaacttattgaggctagtcaagaaagaaaaaatcag atgaaacaattagacatggagagaagaaagaatgagaaactaaacgatttagaggaggaagctaaggagaatgcggagca cctactagccaaagctaacgccatgaggcaagaacaggaagacgagattaaacacttaaatgagcttatactgaatgcca agtgccacgccatcagagacgctcaaatcctggagaaacggcagatcaagggagagatgacagaggaggagaaacgttta gatgtaatgatggaagtggacagacagaatgccattgttatccaggaggagatagagaagaagcgtaaggaggaaaggtt actaggagctgccaaactcctcgatcaaattcaggagaacgaacaggagcgactgtttgaactggaacgtaaagatcagg aaaatatacagatgcagaaatatatcgagaaaatgatggaggaagacaaagtcagtctggagaagaagaggactgagcaa ctgtccctcaggcttttctattcaaacaatgttttaatgagagctcagaaggagcttgtggagaaagagaggcgtgagga ggatgaacataagaagaagaggttggtgcatgcggaagacgtccgcaaacagatccgcaaaaaagaacaagacagagttc tggagaggaatgcgttctttgaggagggagtgaagctggacgaacaggcacgagagaggaggcagaaactggaggaagtg aagaagaagaaattaaacgacctcagggctgccggcattccggagaaatacgtatcacacgttgcccacaaagtcaacgt agtggcgtcataa |
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Protein
| Protein ID | pfu_aug1.0_19570.1_11235.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19570.1_11235.t1 MPGSAISAAGSSASSSSSKRGKTRNYRVVSNTSQVDESLFGQPNHVQQRGEILKDKFDINDNEVTIEDLARERSAKRKNR KKSNNSGKETVQVITKDLIRNLIVPTEDPSGQSIILPRHEFHRIVMEAQVKTKEQREMEIEAYKRQKQELIEASQERKNQ MKQLDMERRKNEKLNDLEEEAKENAEHLLAKANAMRQEQEDEIKHLNELILNAKCHAIRDAQILEKRQIKGEMTEEEKRL DVMMEVDRQNAIVIQEEIEKKRKEERLLGAAKLLDQIQENEQERLFELERKDQENIQMQKYIEKMMEEDKVSLEKKRTEQ LSLRLFYSNNVLMRAQKELVEKERREEDEHKKKRLVHAEDVRKQIRKKEQDRVLERNAFFEEGVKLDEQARERRQKLEEV KKKKLNDLRAAGIPEKYVSHVAHKVNVVAS |
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