Gene
| Gene Model ID | pfu_aug1.0_19685.1_11248 |
|---|---|
| Locus | scaffold19685.1 : 3651 ... 7235 : - |
| To GenomeBrowser | scaffold19685.1:3651..7235 |
| Genes list of scaffold | scaffold19685.1 |
| Synonym | pfu_aug2.0_21.1_03423 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_19685.1_11248.t1 | 6 | 1 | WD40 | 194 | 222 | 4.3e-26 | 89.7 | 0.0097 | 48.0 | 4.0 |
| pfu_aug1.0_19685.1_11248.t1 | 6 | 2 | WD40 | 250 | 282 | 4.3e-26 | 89.7 | 1.9e-10 | 9.6e-07 | 28.4 |
| pfu_aug1.0_19685.1_11248.t1 | 6 | 3 | WD40 | 288 | 325 | 4.3e-26 | 89.7 | 8.8e-10 | 4.4e-06 | 26.3 |
| pfu_aug1.0_19685.1_11248.t1 | 6 | 4 | WD40 | 340 | 358 | 4.3e-26 | 89.7 | 0.64 | 3200.0 | -1.8 |
| pfu_aug1.0_19685.1_11248.t1 | 6 | 5 | WD40 | 373 | 411 | 4.3e-26 | 89.7 | 2.5e-08 | 0.00013 | 21.7 |
| pfu_aug1.0_19685.1_11248.t1 | 6 | 6 | WD40 | 442 | 455 | 4.3e-26 | 89.7 | 0.019 | 94.0 | 3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_19685.1_11248.t1 | gi|260798356|ref|XP_002594166.1| | hypothetical protein BRAFLDRAFT_275517 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_19685.1_11248.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19685.1_11248.t1 atgtatatgattccttgtttaacgtgggtgaagaggggaatcgcaaaatcagtaccagaaaaggttcaagtagacaaaga agaactgaagaggattattgaagagacaagggataaagtcaatgaggcagaaaatgatgatgacgacaccgttgatggtt ctgatggggatgaggacttgaaggaagatggggcaactggagatgattctggtgtacctagacctgacatggctgtcaaa cagaagaagcttaaagctggatcaaagagaaaacgtgaaggagatgacattgtagacaagtatgacttggatgattacga tgatgaaggtgaagatgacatgatgaaaggacttggtgatttgacatgttttgccacaaatgaagatgatccttacctta caatgaaagaggatgacagtgatgatgaagattttgccataaaagccacagataatttgataataacaggaaaagcagag aaagaaatgtgctcgttgattgtacatgtttacaatgaagatctcggcaatttgtatgtacatcatgatatcttgttatc ttcctttcctcttgcagttgagtggttaaactttgacatcggggaggaaaaaccaggaaactttgtagctgtggggacga tggatcccttcatagaaatctgggatatagatgttgtagattctcttgaaccagtggctattttaggtacaaaaatgaca aagaaaaagaacaagaaacctggtggtaaagggcattcagatgcaatattagacctgtcctggaattcaacagtaaggaa tattctggccagtgcctctgctgatactacagttggactatgggatttaacggaaggaaccatggtgacttccattagac aacacaatgacaaggtacagtgtttggaatggcaacctggtgatcagcaaacgttattgacagggtcatttgataaaagt gtcagactttttgactgtcgaaacccaaaagcaaatgtgaaaaaatggaatttaagtggcgaagtagaaaaagttgcttg gaatacattcaattcttttaactattttgcttccacagatgatggtatggtatattgcatagattcaaggaaagacaaac cactgtttacattatcagctcatgaagaagccgttaccggcatctgccagagttcaggaatacccgatttgttagtcaca acatccagtgatcaaatcatgaagatttgggatgtacaaaacaataaaccctcccttgtactcagcagaaatcttaagct taaccagttgttctctgcaggtgcctgtcctgaggcgccatttgtatttgctgttggtggagaaaaggaaatcaaagtgt gggatatcagagagagtgctgccgtcaggaagcattttgcgtctcgatcgccaagtggtgtgacaatggagggagatggt gatgtaccagaggatttgaatgctgaagctatggatggtttgacccttgatccgggggaggaagatattgacactatatt tggtgaagatgacagtaatactgctcctaagaagaagaagaaaaaaaagaagaagaagaagtcaacgatggtgttggaag gagaggagacttccagtatgaatgccgttggcagtttagctcataacacaaataatcaagaacctatgagtatgctcagt gaaggtgttagtacaggtgccaaaaagaaaaaaagaaaagaaaaaagccaaaacaagaagttgtacaagaaacaatga |
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Protein
| Protein ID | pfu_aug1.0_19685.1_11248.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19685.1_11248.t1 MYMIPCLTWVKRGIAKSVPEKVQVDKEELKRIIEETRDKVNEAENDDDDTVDGSDGDEDLKEDGATGDDSGVPRPDMAVK QKKLKAGSKRKREGDDIVDKYDLDDYDDEGEDDMMKGLGDLTCFATNEDDPYLTMKEDDSDDEDFAIKATDNLIITGKAE KEMCSLIVHVYNEDLGNLYVHHDILLSSFPLAVEWLNFDIGEEKPGNFVAVGTMDPFIEIWDIDVVDSLEPVAILGTKMT KKKNKKPGGKGHSDAILDLSWNSTVRNILASASADTTVGLWDLTEGTMVTSIRQHNDKVQCLEWQPGDQQTLLTGSFDKS VRLFDCRNPKANVKKWNLSGEVEKVAWNTFNSFNYFASTDDGMVYCIDSRKDKPLFTLSAHEEAVTGICQSSGIPDLLVT TSSDQIMKIWDVQNNKPSLVLSRNLKLNQLFSAGACPEAPFVFAVGGEKEIKVWDIRESAAVRKHFASRSPSGVTMEGDG DVPEDLNAEAMDGLTLDPGEEDIDTIFGEDDSNTAPKKKKKKKKKKKSTMVLEGEETSSMNAVGSLAHNTNNQEPMSMLS EGVSTGAKKKKRKEKSQNKKLYKKQ |
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