Gene
| Gene Model ID | pfu_aug1.0_197.1_22056 |
|---|---|
| Locus | scaffold197.1 : 1 ... 12135 : - |
| To GenomeBrowser | scaffold197.1:1..12135 |
| Genes list of scaffold | scaffold197.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_197.1_22056.t1 | 9 | 1 | Spectrin | 51 | 152 | 0.0 | 172.3 | 1.4e-14 | 2.5e-11 | 43.7 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 2 | Spectrin | 159 | 255 | 0.0 | 172.3 | 1.9e-09 | 3.5e-06 | 27.2 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 3 | Spectrin | 263 | 324 | 0.0 | 172.3 | 0.013 | 25.0 | 5.2 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 4 | Spectrin | 334 | 438 | 0.0 | 172.3 | 8.7e-09 | 1.6e-05 | 25.1 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 5 | Spectrin | 439 | 543 | 0.0 | 172.3 | 1.4e-07 | 0.00026 | 21.2 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 6 | Spectrin | 549 | 609 | 0.0 | 172.3 | 6.7e-05 | 0.12 | 12.6 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 7 | Spectrin | 604 | 707 | 0.0 | 172.3 | 4.8e-09 | 8.8e-06 | 25.9 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 8 | Spectrin | 713 | 812 | 0.0 | 172.3 | 1.0e-11 | 1.9e-08 | 34.5 |
| pfu_aug1.0_197.1_22056.t1 | 9 | 9 | Spectrin | 818 | 921 | 0.0 | 172.3 | 2.2e-09 | 4.1e-06 | 27.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_197.1_22056.t1 | gi|291242883|ref|XP_002741363.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_197.1_22056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_197.1_22056.t1 atgcagaaactaaacgccgccctatgtgagggagctagcagggagaggaagggaccgctaaaaggagaaatgtccgacat cgacaaacgactggacaacgtatctgtccgcttgaacgctaagctggcagacttagaagctacaatagccaagtggacag agtactataaacgattaaaccagttctgtaattggctgaatgagaaagaggccaaacttaatgaggtgtacgagaataag accgactcaccagaaacacaactcggcaaagctcaggccattaccacagaagtatcagagaatcacatcaccttggaaaa tctggagaaagatgccagaggaatgtctcaaaacttccgctcaagggagacgtcagcccttaaaaccaagctggcaagtg tccgacggcagtgggagagtctgtgctcacgtgccaaagaccgatcctcggcactaaccggcagtgtggcacattggcaa atgcatcagaaccttaaggaacagcttatgccgtggatactaaaggcagaaaagtactgtgccacggaactccctaaatg tgcctcaatggaggaagccaaggagctccatgacctacatcaggctttccttaacgagtgtgaggagaatttcccagtgt ttgaaaaactgaatacggaggcaggatatttgatggaacagcccaacatggccagtgatatggaagcgttacagaaaaga tggaacgatatcatcggctgttctgaggaacgatctcacaaggtggataaagcactcggagcgtggtcggcctttgataa cgaacttaacaattttgatgaagtacttgagaagttccagaagaaacttgaggaggaacctaacatggccacaacagatg ttcaggtgctagaacatgaactggcccttagtaagaatttacaagaggagatcaaaagccagaaaccacatttaacagca ttacaacgtcaggttaaactagagggatctgtagaccagctgtctgcgtacgacaacaaatacgacaatctcagtaaatg gctgaaagacacggaggctaagctcagaaatcagacggcacttaaacctgatctacaaggcaaagttgaccaggctgaac tgtttgcagacctagttgacgatgtagagagacatcagcctcagtttgacgccctacgacagcaggctcaggaaatctcc cagtccagcggtgatggtagaacagcatcgtacgcaggacaacttctctcacgatatcaggctctccaagcttctgtcag ggagcaagcagagagatgtgaccagaatgtggaggatcaccaagactacaacaaccgacataagaagtgtattgattggt tagaggccgtatcacaggaactagaggagtgtaataaccaacctgtcgaccaggaaacgctacaggctaaactagaaact gtagaggatcttatgaacagtaaggaggagggactggctcagttcagtgccgcactagaagccggagaaagactgttccc gaatacgtcaaatgatggtcgagagggaatccgtaaggagctacgaaatctccgtgagaagtgggaatcctttaatgata cactaaatgacgcacaacgaagcctggaaagcagcaagatgcagtggtctacgtttgatgaaaattacgatcagttgctt aaatgggtcactgatatggagtgtcagatagaacacgataatgagctttgtaacacgttacaggagaaaaaagccatgct gcagcattaccgggacctaatacataagctacaggaccacgcccgagaacacgaggcatacaatgagaatttctccgagt gtgcagaatgggtcaataccctggcaaggagacttcaagtgtgtgctgacatggcgggggacaaacacgatgtagaagac agactcatgaaattacaggaattaatggccgaaaaagagcaaggtgcttctaggatccattacactgtagagtgtggaga gagactttatcctagcactgcctccgagggtagagatacgatacgacaagagttacgtaccttgagagatcagtgggaac aagtatgtgatctactctccgatacacagcgcaaacttgactcatgtttactacaatggtcatcttatgatgaaaacttc gaacagttccaaaaatggctgctcgatacagaaattcaactcaaagaagatatggatctgaaatcaacactgccagagaa aaaagcgcagttacaaaatcaccgagtgttacatcaggacattatgtcacgtcaacacgtcatggataatctctgtgaca aagctaagaatctcagtcattcgacaccgacagctaaggtcaacaaatttgttgacgaacttcagaagaaatatggagag ctgtgtacgagctctaaccagatgatggagaagttagatgtagctgtaaaggaccatcaacagttccaggatacgtacca agactgtcaggactggctcaactcttttaaggagaaagtccatgcttgttctgatacgtcaggagataggctgtccttac aaaacaaactggaaaggctcaaggagtatgccgaaagagttggagatggagagaagaaactcaaaaacacaaaatctctg gctgagaaaactgccaagaattcatctcaacctggacgtgaagttctcaaacgtgagatggaacatctcagtgcagagtg ggaggactatctcaacagaatacagcaagctgaggaagatctcgggaa |
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Protein
| Protein ID | pfu_aug1.0_197.1_22056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_197.1_22056.t1 MQKLNAALCEGASRERKGPLKGEMSDIDKRLDNVSVRLNAKLADLEATIAKWTEYYKRLNQFCNWLNEKEAKLNEVYENK TDSPETQLGKAQAITTEVSENHITLENLEKDARGMSQNFRSRETSALKTKLASVRRQWESLCSRAKDRSSALTGSVAHWQ MHQNLKEQLMPWILKAEKYCATELPKCASMEEAKELHDLHQAFLNECEENFPVFEKLNTEAGYLMEQPNMASDMEALQKR WNDIIGCSEERSHKVDKALGAWSAFDNELNNFDEVLEKFQKKLEEEPNMATTDVQVLEHELALSKNLQEEIKSQKPHLTA LQRQVKLEGSVDQLSAYDNKYDNLSKWLKDTEAKLRNQTALKPDLQGKVDQAELFADLVDDVERHQPQFDALRQQAQEIS QSSGDGRTASYAGQLLSRYQALQASVREQAERCDQNVEDHQDYNNRHKKCIDWLEAVSQELEECNNQPVDQETLQAKLET VEDLMNSKEEGLAQFSAALEAGERLFPNTSNDGREGIRKELRNLREKWESFNDTLNDAQRSLESSKMQWSTFDENYDQLL KWVTDMECQIEHDNELCNTLQEKKAMLQHYRDLIHKLQDHAREHEAYNENFSECAEWVNTLARRLQVCADMAGDKHDVED RLMKLQELMAEKEQGASRIHYTVECGERLYPSTASEGRDTIRQELRTLRDQWEQVCDLLSDTQRKLDSCLLQWSSYDENF EQFQKWLLDTEIQLKEDMDLKSTLPEKKAQLQNHRVLHQDIMSRQHVMDNLCDKAKNLSHSTPTAKVNKFVDELQKKYGE LCTSSNQMMEKLDVAVKDHQQFQDTYQDCQDWLNSFKEKVHACSDTSGDRLSLQNKLERLKEYAERVGDGEKKLKNTKSL AEKTAKNSSQPGREVLKREMEHLSAEWEDYLNRIQQAEEDLG |
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