Gene
| Gene Model ID | pfu_aug1.0_197.1_22064 |
|---|---|
| Locus | scaffold197.1 : 113676 ... 118901 : + |
| To GenomeBrowser | scaffold197.1:113676..118901 |
| Genes list of scaffold | scaffold197.1 |
| Synonym | pfu_aug2.0_3347.1_25725 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_197.1_22064.t1 | 2 | 1 | zf-B_box | 17 | 59 | 3.4e-11 | 42.8 | 2.5e-08 | 3.4e-05 | 23.6 |
| pfu_aug1.0_197.1_22064.t1 | 2 | 2 | zf-B_box | 76 | 112 | 3.4e-11 | 42.8 | 3.0e-10 | 4.0e-07 | 29.8 |
| pfu_aug1.0_197.1_22064.t1 | 5 | 1 | SGL | 90 | 158 | 3.4e-06 | 26.6 | 0.34 | 460.0 | -0.1 |
| pfu_aug1.0_197.1_22064.t1 | 5 | 2 | SGL | 306 | 400 | 3.4e-06 | 26.6 | 0.0011 | 1.4 | 8.1 |
| pfu_aug1.0_197.1_22064.t1 | 4 | 1 | NHL | 381 | 392 | 9.5e-07 | 28.4 | 0.22 | 290.0 | 1.7 |
| pfu_aug1.0_197.1_22064.t1 | 5 | 3 | SGL | 409 | 469 | 3.4e-06 | 26.6 | 0.0077 | 10.0 | 5.3 |
| pfu_aug1.0_197.1_22064.t1 | 4 | 2 | NHL | 416 | 431 | 9.5e-07 | 28.4 | 0.17 | 220.0 | 2.0 |
| pfu_aug1.0_197.1_22064.t1 | 5 | 4 | SGL | 512 | 550 | 3.4e-06 | 26.6 | 0.0027 | 3.6 | 6.8 |
| pfu_aug1.0_197.1_22064.t1 | 4 | 3 | NHL | 514 | 535 | 9.5e-07 | 28.4 | 0.00012 | 0.16 | 11.9 |
| pfu_aug1.0_197.1_22064.t1 | 4 | 4 | NHL | 555 | 571 | 9.5e-07 | 28.4 | 3.9e-05 | 0.052 | 13.5 |
| pfu_aug1.0_197.1_22064.t1 | 5 | 5 | SGL | 556 | 575 | 3.4e-06 | 26.6 | 0.041 | 55.0 | 3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_197.1_22064.t1 | gi|260824810|ref|XP_002607360.1| | hypothetical protein BRAFLDRAFT_69766 [Branchiostoma floridae] | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_197.1_22064.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_197.1_22064.t1 atggcggagggtttcagtcttccattacaatttccccagacgacagtggaatgtgagaaatgcagtgctgacgttgatgt cacgtggttttgtaagaactgtcctgcctccctctgcaataactgcaaagaagaccattccagagataaactgatgagaa agcatgaagtggtaccaagatctggaagcgtattaaggtcccatggatcatggaaagtgagagaatcatgtaaaatgcac aaaaacagtgatttaataacttactgtaatgattgtaaagaaccatgttgtattgattgtatggaagaaaaacatcatcg ccatgctttcacaaaacttgatacgaaatatttcgaagccgagtctcgccttaactttctggtagatgttctgtcaaaat ctacgatactaaccattcaaaatgagatttcaagtttgaaacaaaatattgaaactttcaatgaaaatttcaatctcgtg aatacagaattaaacacagctgagaacaaagttatgacaactgtcgcagagtcttttaaaaaattacgcaaaaatctgtc tgtgaaacaaaaggaattagtatctaaaagagaggatagaatcaaacgatgtggccatcagatgaatgaaattgaaagtt tcattgcaagtactgaacagaaaattagggcagggggtctggatctgatagagtactttcctatccttcctaccctccag tcattccactctgacataaccactcctgttccttgctttgaattaaatgaagccattctgaacgaatgtgaaacaaacat agggcagctatgttttcaagatagaaaatctgattcaagtcacgaatcattacacaatgttagtgttagtaataaagaga aaaatgacgaatctgtggaaacggataaagagggggtaagtgtatctggcattaaagaagaaaagatagatagtttcaaa acacctatttctatttcgagtatagaacctgtaggtgatggcacagcatggattgcaagtgttgaaagtgacacaatgta tctatatgacatcagaggtaaagagataaggtcagttataatgaagggacagagaggattcttaaaaaaagcgaaaaaga tagagatttacgacatggttttacagagcaatggtgatattgtagtggcatgctttgacgacaaggtaagacgtgtgtca gttagtggtaagataactactctaattgacacaacaccatttatcccttatggagtgtgtctgacagacagggaggagat agtagtatgtatggcaggtcagaaggacaaaaaccacgtggctgtgtatacacctgacggtaagtcaaaggtaagggaga taacagctagagatagtaacaacaagcagttgtttaccggaccagattgtttagttatcaatgacggtcagataacagtg ttgaacggcgctgagaacgttgtgtccttggatcaacacagtggtaaggtactctgggtgtatgatggtagtcaggcttc acttaaagagaactttgatccctcaggaatctgtaaggataacttctcaaatattcttgtcactgattatgaaaaccatt gtattcattatatcaacaagaaaggaagtttgataagcattataatggttaaagattatggattaaaaaacccatgggga atatgtgtggacagtcagagtggaaatatatggtgtgggaatacagaagacaaagttctgttactgaaatatccaagata a |
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Protein
| Protein ID | pfu_aug1.0_197.1_22064.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_197.1_22064.t1 MAEGFSLPLQFPQTTVECEKCSADVDVTWFCKNCPASLCNNCKEDHSRDKLMRKHEVVPRSGSVLRSHGSWKVRESCKMH KNSDLITYCNDCKEPCCIDCMEEKHHRHAFTKLDTKYFEAESRLNFLVDVLSKSTILTIQNEISSLKQNIETFNENFNLV NTELNTAENKVMTTVAESFKKLRKNLSVKQKELVSKREDRIKRCGHQMNEIESFIASTEQKIRAGGLDLIEYFPILPTLQ SFHSDITTPVPCFELNEAILNECETNIGQLCFQDRKSDSSHESLHNVSVSNKEKNDESVETDKEGVSVSGIKEEKIDSFK TPISISSIEPVGDGTAWIASVESDTMYLYDIRGKEIRSVIMKGQRGFLKKAKKIEIYDMVLQSNGDIVVACFDDKVRRVS VSGKITTLIDTTPFIPYGVCLTDREEIVVCMAGQKDKNHVAVYTPDGKSKVREITARDSNNKQLFTGPDCLVINDGQITV LNGAENVVSLDQHSGKVLWVYDGSQASLKENFDPSGICKDNFSNILVTDYENHCIHYINKKGSLISIIMVKDYGLKNPWG ICVDSQSGNIWCGNTEDKVLLLKYPR |
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