Gene
| Gene Model ID | pfu_aug1.0_1970.1_66165 |
|---|---|
| Locus | scaffold1970.1 : 20626 ... 38076 : + |
| To GenomeBrowser | scaffold1970.1:20626..38076 |
| Genes list of scaffold | scaffold1970.1 |
| Synonym | pfu_aug2.0_137.1_23550 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1970.1_66165.t1 | 1 | 1 | Ribosomal_L23 | 161 | 228 | 6.9e-09 | 35.5 | 8.6e-13 | 1.3e-08 | 34.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1970.1_66165.t1 | gi|17647675|ref|NP_523889.1| | mitochondrial ribosomal protein L23, isoform A [Drosophila melanogaster] | 5.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1970.1_66165.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1970.1_66165.t1 atgcgtccgatttcagttccgcttttcttcattttgaaatcaatatttccactctctttcacattgagattcataaatga gcatatttttagtagaagtttatggtggaaagaatccactgtagacaaaggacggactcgtacgttgaaccaaggaacag tggacaaacagtttataagtcctttaccggcacggatccagagtggggaagaggggagttgtgtcgacccaaagagtcga ttcgaggcacgaagtgctgagtgggggaggggttgccccctccttatgagaattccggcatactatatgaaaaatgcatt tcacaaacttgatcctaaacagttcagaccagtattagataaaacaccactttgggaaaggccaatacctaagtacccag tatataaagatggtggacctcagactcgagtattcctctgtcatttctggatgaagatgctcaaaccaaacaggagacaa gctaaagatgtagtcaattttgaagttcatccccaaatgagtaaatttgatatcaaacaatacctagaaaagctgtacca ggtatcagttctacatgtctcaacaaaactagcccctggaacgccagtagaaaaagaaggagcaaagggaagtaaatatt attctcaccagcgacctgacagacggctagcctatgttacattgctccttttcatgaagatgagttga |
|
Protein
| Protein ID | pfu_aug1.0_1970.1_66165.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1970.1_66165.t1 MRPISVPLFFILKSIFPLSFTLRFINEHIFSRSLWWKESTVDKGRTRTLNQGTVDKQFISPLPARIQSGEEGSCVDPKSR FEARSAEWGRGCPLLMRIPAYYMKNAFHKLDPKQFRPVLDKTPLWERPIPKYPVYKDGGPQTRVFLCHFWMKMLKPNRRQ AKDVVNFEVHPQMSKFDIKQYLEKLYQVSVLHVSTKLAPGTPVEKEGAKGSKYYSHQRPDRRLAYVTLLLFMKMS |
|