Gene
| Gene Model ID | pfu_aug1.0_19832.1_47340 |
|---|---|
| Locus | scaffold19832.1 : 3796 ... 26113 : + |
| To GenomeBrowser | scaffold19832.1:3796..26113 |
| Genes list of scaffold | scaffold19832.1 |
| Synonym | pfu_aug2.0_1105.1_18091 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_19832.1_47340.t1 | 2 | 1 | C2 | 34 | 120 | 1.6e-27 | 95.1 | 9.8e-22 | 4.9e-18 | 64.7 |
| pfu_aug1.0_19832.1_47340.t1 | 2 | 2 | C2 | 177 | 221 | 1.6e-27 | 95.1 | 2.3e-10 | 1.1e-06 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_19832.1_47340.t1 | gi|260828795|ref|XP_002609348.1| | hypothetical protein BRAFLDRAFT_236160 [Branchiostoma floridae] | 3.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_19832.1_47340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19832.1_47340.t1 atggaggcataccgctcgtttggaggaaataaaacagaagaggatgccagccttggttctatcaacctccgtctgcagta caacacagagacgcacatgttgtcagtggagatagtccaggcagctgacctgatgccccaggggtcgggcagctcagcca atccctactgtaaggtcaccctgctgccagatcatccaagtctgctgaggacacgagtacaggaaacaacactagatcct ctgtttgaggaggaatttatctttgatgtcagtcagcataagctgaggtcgtgtaaacttcagatacttgtgatggacag tgaccattgtgctgaggacgagtgtcttggacaagttaaaattccgctggactctatagattttagtgataattctcaat tggaaatatggagaggacttgcgccttatgaagaggaaacgcctcaaaagaatgttcagatgtacgtgctccataatctc gaaattttcaatttatgtaggctcctttcaacgtataggatcagggcaagtttaaccgatccgtccgtcaaagtatcagt gctacagaattccaaacggatcaagaagaagaaaacgtcaactggtcacggaactgaaaatccgatgtacaacgaggctc tagtatttagtatctccagggacattttaccactcatttcaatggaaattcaaaaaggcttgcgcttgccatgcgacagc gaacgctatattcattttaatcaagaatattttttaaaagtgactttgatcgtcataggaacagcggaaaatttgaacac ggacaatgatggcggtgagactccagtaggtttgagaaaatgtgataatgatggacagtgcggagaaggcaaaaaatgtt gcaatgaaccaaatggtggaacagcgtgtaaggaaccatcaccagttgctggaggaacatttcagacgtcttaa |
|
Protein
| Protein ID | pfu_aug1.0_19832.1_47340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19832.1_47340.t1 MEAYRSFGGNKTEEDASLGSINLRLQYNTETHMLSVEIVQAADLMPQGSGSSANPYCKVTLLPDHPSLLRTRVQETTLDP LFEEEFIFDVSQHKLRSCKLQILVMDSDHCAEDECLGQVKIPLDSIDFSDNSQLEIWRGLAPYEEETPQKNVQMYVLHNL EIFNLCRLLSTYRIRASLTDPSVKVSVLQNSKRIKKKKTSTGHGTENPMYNEALVFSISRDILPLISMEIQKGLRLPCDS ERYIHFNQEYFLKVTLIVIGTAENLNTDNDGGETPVGLRKCDNDGQCGEGKKCCNEPNGGTACKEPSPVAGGTFQTS |
|