Gene
| Gene Model ID | pfu_aug1.0_19863.1_61946 |
|---|---|
| Locus | scaffold19863.1 : 1 ... 9365 : - |
| To GenomeBrowser | scaffold19863.1:1..9365 |
| Genes list of scaffold | scaffold19863.1 |
| Synonym | pfu_aug2.0_1018.1_27984 |
Manual annotation
| Study field | immunity |
|---|---|
| Gene name | galectin |
| Description | reciprocal BLASTN best hit to NCBI Accession FJ812171.1the CDS also exist in pfu_aug1.0_5073.1_59692,pfu_aug1.0_100999.1_28106 |
| mRNA evidence |
| Study field | immunity |
|---|---|
| Gene name | galectin |
| Description | NCBI blastP best hit to Pinctada fucata galectin [ACO36044] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_19863.1_61946.t1 | 3 | 1 | Gal-bind_lectin | 16 | 141 | 0.0 | 200.8 | 5.8e-34 | 8.5e-30 | 102.8 |
| pfu_aug1.0_19863.1_61946.t1 | 3 | 2 | Gal-bind_lectin | 149 | 277 | 0.0 | 200.8 | 2.2e-31 | 3.2e-27 | 94.4 |
| pfu_aug1.0_19863.1_61946.t1 | 3 | 3 | Gal-bind_lectin | 286 | 308 | 0.0 | 200.8 | 0.033 | 480.0 | 0.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_19863.1_61946.t1 | gi|225906399|gb|ACO36044.1| | galectin [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_19863.1_61946.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19863.1_61946.t1 atgaggattacctaccaggctaaagaccaggacgacagtgcggcatatcgcattccaaatggtctacgtgtaggaaccca ggttctcctgagggggagagtccaggagggatgtgaagcctttgcagtcaatctccagcaggaggagggaggtggcgaca ttgcactccactttaacccccgaccaagtgaaggcatcgtcgttcggaactgctatgctggggactggcagagcgaggaa agagaccaaccacactttccttttgactgtggaagatctttcctcctgcgtatagaggcggcaggagatggtttccgaac atacgtcaatggcaaaccctatatcgacttcggacacaggatgggaatggatcatatcagatatctgttcttatcatcag gagccgagttttatgacatcaccatccaagatcgctataggttgccatacagtgctgagattcccgggggtatgagtcca ggcaaggctatcagggtccggggagctggtcaggataatgatgggttcagtctgaacttcagctgtgatccaagtaacga gcggtgtgccttccatttcaatccccgccctaacgaaggtgtggttatccggaacgcctgtctcgatggatggggaggag aagagagggattatgaagcagatttccccttcagtcctttccagtattttgatgctgtcctagttgccaatgacgataaa tatattgtatttgtgaatgatgagtactttgcagaattcaatcacagatgtgacgtccatgaatgtaatttcttcaacat ccgcgggaacatggatatcctagacgtcagcctgtttgaacctatgggtgacgagtttgtaaagagagtcccatcaggat tggagaaaggagataacatagtactccgaggttttgcaaggccagggtggacacggtatgtatga |
|
Protein
| Protein ID | pfu_aug1.0_19863.1_61946.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19863.1_61946.t1 MRITYQAKDQDDSAAYRIPNGLRVGTQVLLRGRVQEGCEAFAVNLQQEEGGGDIALHFNPRPSEGIVVRNCYAGDWQSEE RDQPHFPFDCGRSFLLRIEAAGDGFRTYVNGKPYIDFGHRMGMDHIRYLFLSSGAEFYDITIQDRYRLPYSAEIPGGMSP GKAIRVRGAGQDNDGFSLNFSCDPSNERCAFHFNPRPNEGVVIRNACLDGWGGEERDYEADFPFSPFQYFDAVLVANDDK YIVFVNDEYFAEFNHRCDVHECNFFNIRGNMDILDVSLFEPMGDEFVKRVPSGLEKGDNIVLRGFARPGWTRYV |
|