Gene
| Gene Model ID | pfu_aug1.0_19883.1_61947 |
|---|---|
| Locus | scaffold19883.1 : 3942 ... 15185 : - |
| To GenomeBrowser | scaffold19883.1:3942..15185 |
| Genes list of scaffold | scaffold19883.1 |
| Synonym | pfu_aug2.0_1708.1_28474 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_19883.1_61947.t1 | 1 | 1 | zf-rbx1 | 40 | 82 | 6.7e-09 | 35.7 | 2.2e-11 | 2.4e-08 | 33.9 |
| pfu_aug1.0_19883.1_61947.t1 | 1 | 1 | zf-RING_2 | 41 | 82 | 6.7e-14 | 51.4 | 9.8e-17 | 1.0e-13 | 50.8 |
| pfu_aug1.0_19883.1_61947.t1 | 1 | 1 | zf-C3HC4_3 | 41 | 86 | 1.7e-07 | 30.8 | 2.4e-10 | 2.5e-07 | 30.2 |
| pfu_aug1.0_19883.1_61947.t1 | 1 | 1 | zf-C3HC4_2 | 43 | 81 | 9.3e-08 | 31.9 | 1.4e-10 | 1.5e-07 | 31.3 |
| pfu_aug1.0_19883.1_61947.t1 | 1 | 1 | zf-C3HC4 | 43 | 81 | 1.4e-07 | 31.0 | 2.2e-10 | 2.3e-07 | 30.3 |
| pfu_aug1.0_19883.1_61947.t1 | 1 | 1 | zf-RING_5 | 43 | 82 | 3.8e-06 | 26.5 | 5.5e-09 | 5.8e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_19883.1_61947.t1 | gi|327290272|ref|XP_003229847.1| | PREDICTED: E3 ubiquitin-protein ligase synoviolin [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_19883.1_61947.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19883.1_61947.t1 atgtatctatcaatgaggagcttcaagaaagccctccatgatgtcatcatgtctagacgggcaatcaggaatatgaatac attatatcctgatgccgtacctgaggaccttcagcctggggatgtgtgtattatctgccgtgaggagatgaacacatctg ccaagaagcttccatgtaaccatatcttccataccagttgtctgcgctcatggttccaacgtcaacagacttgccctaca tgtaggatggatgtattgcgtatgccacgcccacaaacagcccctccccctcctcaacaaccacctcaagttcctcagca acctcagatgccacctaactcttccacagccacaagtgtgtcagcatcagcgagtagttctcagcaacaacaacaagcaa cccagtccacttctacagcaacagtatcctccacatttacacatcctactgcctccatggccacacccctgtctccctcc actatgccaccagtcatgccaatgttccccttcatgatgccatatgcttccacagccacaagtgtgtcggcatcagccag taattctcagcaacaacaacaagcaacccagtccacttctacagcaacagtatcctccacatttacacatcctactgcct ccatggccacacccctgtctccctccactatgccaccagtcatgcctatgttccccttcatgatgccatatggaatgccc agacctccgtccaatcctgctggactctccatagaagaacttcagagaatggagggtcaagaaagagagaatatagaggc cagaattcagtggttacgagatattcagtcactattagatggagctatgattctcattaatcaatataatacagtagcat ctcaatcaagtataccaaatataaacacatctggaagtccacagtcacaaagtaatccagtatcacagtcatcagacaaa gagacttccagtcaaaaagaagataatgcagaaaaatcatctttaccaaaaaatgatagtaatttagacttctcagtaaa ccttacagatattacagtatatgttacagatatttga |
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Protein
| Protein ID | pfu_aug1.0_19883.1_61947.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_19883.1_61947.t1 MYLSMRSFKKALHDVIMSRRAIRNMNTLYPDAVPEDLQPGDVCIICREEMNTSAKKLPCNHIFHTSCLRSWFQRQQTCPT CRMDVLRMPRPQTAPPPPQQPPQVPQQPQMPPNSSTATSVSASASSSQQQQQATQSTSTATVSSTFTHPTASMATPLSPS TMPPVMPMFPFMMPYASTATSVSASASNSQQQQQATQSTSTATVSSTFTHPTASMATPLSPSTMPPVMPMFPFMMPYGMP RPPSNPAGLSIEELQRMEGQERENIEARIQWLRDIQSLLDGAMILINQYNTVASQSSIPNINTSGSPQSQSNPVSQSSDK ETSSQKEDNAEKSSLPKNDSNLDFSVNLTDITVYVTDI |
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