Gene
| Gene Model ID | pfu_aug1.0_1995.1_22812 |
|---|---|
| Locus | scaffold1995.1 : 1 ... 10765 : - |
| To GenomeBrowser | scaffold1995.1:1..10765 |
| Genes list of scaffold | scaffold1995.1 |
| Synonym | pfu_aug2.0_501.1_04255 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1995.1_22812.t1 | 1 | 1 | zf-C4 | 23 | 91 | 6.4e-30 | 103.2 | 1.6e-33 | 1.2e-29 | 102.3 |
| pfu_aug1.0_1995.1_22812.t1 | 1 | 1 | Hormone_recep | 103 | 282 | 8.0e-37 | 126.3 | 1.50001e-40 | 1.1e-36 | 125.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1995.1_22812.t1 | gi|162416915|emb|CAJ53825.2| | putative hepatocyte nuclear factor 4 [Mytilus galloprovincialis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_1995.1_22812.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1995.1_22812.t1 atgggagccctgggaccaatgcctggacttccgggaaacgtgtcccccacccaggggatgagccagttttgttccatatg tggagaccgagccacggggaaacactacggcgcctcgagttgtgacggatgtaagggcttcttcaggaggagcgtgagga aaaatcacctgtattcctgcagatttaacagaaactgtgttgtagacaaagacaaaaggaaccaatgtcggtattgcaga ctacgcaagtgcttccgggcgggaatgaaaaaagaagtttgtggacaagatctgtcacagaaaatgatcgctacaacaaa cgatgtgtgcgagtccatgaaacagcaacttctcatactggtagaatgggccaagtacattccgtgcttctgtgaacttc ccctcgatgatcaggttgctttgttgagagctcatgcaggggaacacttggtgttgggggttgctcgcaggtcaatgggg gtcaaggacgttctattattaggaaccgatgcaatcataccacgcgtcacaactgatctggaaataggaaggtgtgcagg caggatcttagatgaattggtcgctccaatgcgagaagttcaaattgatgactctgaatttgcctgcatgaaagctattg ttttctttgatccagatgccaaaggtttaagcgatccacagaaaattaagaatttccgttaccaagtgcagatcaattta gaggactatataaatgatagacaatatgacaccagggggcgctttggtgaaattctgctgatgttacctccccttcaaag cattacatggcagatgatcgaacaaattcagttcgctaaattattcggaatggcaaaaatcgataacctccttcaagaaa tgctgcttggaggtgttgtgaaaaatgtgagcattgccaagcatatatttaactcactagcatttgacatttga |
|
Protein
| Protein ID | pfu_aug1.0_1995.1_22812.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1995.1_22812.t1 MGALGPMPGLPGNVSPTQGMSQFCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYSCRFNRNCVVDKDKRNQCRYCR LRKCFRAGMKKEVCGQDLSQKMIATTNDVCESMKQQLLILVEWAKYIPCFCELPLDDQVALLRAHAGEHLVLGVARRSMG VKDVLLLGTDAIIPRVTTDLEIGRCAGRILDELVAPMREVQIDDSEFACMKAIVFFDPDAKGLSDPQKIKNFRYQVQINL EDYINDRQYDTRGRFGEILLMLPPLQSITWQMIEQIQFAKLFGMAKIDNLLQEMLLGGVVKNVSIAKHIFNSLAFDI |
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