Gene
| Gene Model ID | pfu_aug1.0_2004.1_29941 |
|---|---|
| Locus | scaffold2004.1 : 42396 ... 65925 : - |
| To GenomeBrowser | scaffold2004.1:42396..65925 |
| Genes list of scaffold | scaffold2004.1 |
| Synonym | pfu_aug2.0_1947.1_25216 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2004.1_29941.t1 | 2 | 1 | SSF | 37 | 329 | 1.0e-22 | 80.4 | 6.7e-27 | 1.0e-22 | 80.4 |
| pfu_aug1.0_2004.1_29941.t1 | 2 | 2 | SSF | 410 | 430 | 1.0e-22 | 80.4 | 0.26 | 3800.0 | -3.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2004.1_29941.t1 | gi|260801915|ref|XP_002595840.1| | hypothetical protein BRAFLDRAFT_268046 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| mantle | 3 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2004.1_29941.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2004.1_29941.t1 atgacgttttgcattcaaatgggatatggtcattatccatatttgtcatccaacataccagaaagatgtcatacattatt ttctgacgtcataattcctgtttcagttacgggttttaccttatggggatccgtcatctcagttggaatagtgtgcacaa tctatacaaccataggcggtatgaaagccgtacttcttacagactctttccaagtgtttatgatgttcgctgggctcctg gccatcctgatcagagggagtatggatttagggggattctctgaggcgtggagtaaggcttacgatagcggaagaatcta ctttacagatttcagtccagatcctgccacgcgtcacagtgcatggtcactggtgattggaggaacgtttacatgggtag caatctatggtgtgaatcaagcacaagtccaaagatactgtacatgtccgtctctcaagaaagcacaacttgcgatatgg ttgaatttccctggactgtgtctgatcctgtacttatcctgtctcattggtatggtggtatatggactatatagtcagtg tgatccattcaagtttggactagtcacaacgtccgatcagcttttacctctgtttgtaatggacgtgctaggatacctta cgggatttccaggacttttcgttgcctgcctattcagtggagctctaagtacagtgtcgtctggtttgagtgcattggca gccgtagtccttgaagatgttctgaaaacttacatttggaaggacatgtccgaaagcaaggcaacaatggcttctaaaat actggcgttgatattcggtataatttgtcttggattgacctacattgcatctttgcttggtggcgtcctacaggcagctt tgtccctttttggtatgattggaggaccattacttgggctgtttatcctcggcatgatgtttccttggtcaaataaatgg ggtgcatatgcaggattattcctaggattgatatttatgttctggataggagtaggagctcaaatatatcctccaaataa tccaaaagcaagtataagtaccaaagggtgtaactggaaccttactacgacactatcaactcccggtatgcacaacatgt ataatacgacatcaccgacagacatgacagcggtttttcataatactaccctatctccagccgaagatgttgatgacggt ggagcccttgccaagttatattccttgtcgtatatttggtatagtgctacagcagtgcttacgaccgtagtcatcggtct catcgttagtttcatcacaggtccaaacaaaccggaagatgtggatccgtaccttatttgtccattgttcgatatacttt ttccgtatttaccagaaaagataaagaaaccaatgagatttggtgtaaaatttgataagataaaacctgaagattcatac ggaggcccattaaaagaaagtgaattcgacgttctagaccaggagattaaaattgatcgacatgaaactgtagcagacaa agaaagcaaaaatatcaccactaatgttcatattaacggtgcactgagtatagagacactggaaacatatccacagaacg gtgtacataatgttgacgctataacaaaactttaa |
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Protein
| Protein ID | pfu_aug1.0_2004.1_29941.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2004.1_29941.t1 MTFCIQMGYGHYPYLSSNIPERCHTLFSDVIIPVSVTGFTLWGSVISVGIVCTIYTTIGGMKAVLLTDSFQVFMMFAGLL AILIRGSMDLGGFSEAWSKAYDSGRIYFTDFSPDPATRHSAWSLVIGGTFTWVAIYGVNQAQVQRYCTCPSLKKAQLAIW LNFPGLCLILYLSCLIGMVVYGLYSQCDPFKFGLVTTSDQLLPLFVMDVLGYLTGFPGLFVACLFSGALSTVSSGLSALA AVVLEDVLKTYIWKDMSESKATMASKILALIFGIICLGLTYIASLLGGVLQAALSLFGMIGGPLLGLFILGMMFPWSNKW GAYAGLFLGLIFMFWIGVGAQIYPPNNPKASISTKGCNWNLTTTLSTPGMHNMYNTTSPTDMTAVFHNTTLSPAEDVDDG GALAKLYSLSYIWYSATAVLTTVVIGLIVSFITGPNKPEDVDPYLICPLFDILFPYLPEKIKKPMRFGVKFDKIKPEDSY GGPLKESEFDVLDQEIKIDRHETVADKESKNITTNVHINGALSIETLETYPQNGVHNVDAITKL |
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