Gene
Gene Model ID | pfu_aug1.0_20054.1_61965 |
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Locus | scaffold20054.1 : 34506 ... 45693 : + |
To GenomeBrowser | scaffold20054.1:34506..45693 |
Genes list of scaffold | scaffold20054.1 |
Synonym | pfu_aug2.0_5137.1_26037 |
Manual annotation
Study field | Reproduction |
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Gene name | C1q domain containing protein |
Description | Best hit to MgC1q29. 77 bits, 1e-11 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_20054.1_61965.t1 | 1 | 1 | C1q | 457 | 582 | 3.3e-25 | 88.5 | 2.7e-28 | 1.0e-24 | 86.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_20054.1_61965.t1 |
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Definition | - |
>pfu_aug1.0_20054.1_61965.t1 atggagaacagcaccgcggtaggaacaaatgaagacgggtcatcagatgtaccaaaacagcccttgggaccggatgtttt cagacaacttctaaatcaggaaaccttgatccggatggctttggtaaagaacgtcaactcgctgatgctagatatggtat cgttgaaaaatagtgtaatgtcgctacagaaaactgttgaacagatcacaaaagtgtcggtggaagatataatgggactg aagcttgaaaacaaaaaacttaagaattcaaacgaactattgacggaaataaatcggaaacataaccaaacgatttcgaa actagtagatgacgtaaccgacttgaagaacgaacaaaagctctatgcaaaagaaatgataaatagagatgattatttat ttggtaacacatcagctgctttgtcggagctgaaaactaatttgcgcgttctttctctcagtctagtaaacgtcgacaat cagtcacaagatttcaaaaagcgtttgaatgaagttgacaaatctttgccacagacaataaatgagaaattcagtattgt ttcagaggcgatgaaaaatgcttcaaaccaattatcagagcgaacgaatgacagtttacagaatttaagatcagagcttg aggaatccaaccagagttatttaaggctgtcagcggctgttctatcactagaatggttcaaaaataatatatcgggaaaa tgtgaaaacgcaagcttttatgacatcaataacatagatttacttgcatcagatctaaacagtaaaccgcttggacttga atttttaacacagttactaaatcaagaaacccttatccgcatgaccctggctaaaaatgtcaactcaatcatggatgaca tggtatccttgaaggacgatatgaacacgatgacgagaaaactcgccgatgttttagaaaaagcggaaacggagaaggca gcgacggatagagaattgacagcaataaagctagagaataaaaagatgaaagaagcaataggacgtatagacagggaact gagcttacaaaatgcaacggacattgagtttcagaaggatttagacagttataaagccgaggtacagatgttcgaaaaga ggacggaaaccttgcgggagtcattcgaagagaataccacatcccttgtgtcaaccatttataatcatgtccatgttctg tcgatgagtgtgatcaaggtagatgaacattcacaagatcttagtctgaggatggactcggtgaacaaagccataccgga aatgatagaagacaaaatctcttacgttcttgatctgacaaaaaatctaacacaaaaattatcagatcaacaaaccagac acactgtggcgttcactgcaggattcacatcgtcctcttatcagtctttggggattttgatatttgacaaagtcatctac aacatcggtgatggatatcattcaatatccggggagtttatagcgccatcatctggtgtttacgtgttctatgtatccat aacatcatatgaataccgacacataatagcagacatttacatgaatggaagttccaaggtcaaagtacgagcaaatggac aaagtcaaaatgcaaactatcaaacaggaactaacatggtgatcatgtctttgttgcctggagacagggtttgggttcaa cggagagagggatatggatatacgagttattcagttcccttgacaacgttttccggatttatgatttag |
Protein
Protein ID | pfu_aug1.0_20054.1_61965.t1 |
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Definition | - |
>pfu_aug1.0_20054.1_61965.t1 MENSTAVGTNEDGSSDVPKQPLGPDVFRQLLNQETLIRMALVKNVNSLMLDMVSLKNSVMSLQKTVEQITKVSVEDIMGL KLENKKLKNSNELLTEINRKHNQTISKLVDDVTDLKNEQKLYAKEMINRDDYLFGNTSAALSELKTNLRVLSLSLVNVDN QSQDFKKRLNEVDKSLPQTINEKFSIVSEAMKNASNQLSERTNDSLQNLRSELEESNQSYLRLSAAVLSLEWFKNNISGK CENASFYDINNIDLLASDLNSKPLGLEFLTQLLNQETLIRMTLAKNVNSIMDDMVSLKDDMNTMTRKLADVLEKAETEKA ATDRELTAIKLENKKMKEAIGRIDRELSLQNATDIEFQKDLDSYKAEVQMFEKRTETLRESFEENTTSLVSTIYNHVHVL SMSVIKVDEHSQDLSLRMDSVNKAIPEMIEDKISYVLDLTKNLTQKLSDQQTRHTVAFTAGFTSSSYQSLGILIFDKVIY NIGDGYHSISGEFIAPSSGVYVFYVSITSYEYRHIIADIYMNGSSKVKVRANGQSQNANYQTGTNMVIMSLLPGDRVWVQ RREGYGYTSYSVPLTTFSGFMI |