Gene
| Gene Model ID | pfu_aug1.0_20063.1_54634 |
|---|---|
| Locus | scaffold20063.1 : 1 ... 21835 : - |
| To GenomeBrowser | scaffold20063.1:1..21835 |
| Genes list of scaffold | scaffold20063.1 |
| Synonym | pfu_aug2.0_11.1_03402 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20063.1_54634.t1 | 4 | 1 | LRR_6 | 206 | 224 | 1.3e-08 | 34.0 | 0.0017 | 5.0 | 7.4 |
| pfu_aug1.0_20063.1_54634.t1 | 3 | 1 | LRR_1 | 206 | 219 | 7.6e-06 | 25.2 | 0.0041 | 12.0 | 6.3 |
| pfu_aug1.0_20063.1_54634.t1 | 4 | 2 | LRR_6 | 235 | 254 | 1.3e-08 | 34.0 | 0.00038 | 1.1 | 9.5 |
| pfu_aug1.0_20063.1_54634.t1 | 4 | 3 | LRR_6 | 263 | 282 | 1.3e-08 | 34.0 | 0.05 | 150.0 | 2.9 |
| pfu_aug1.0_20063.1_54634.t1 | 3 | 2 | LRR_1 | 263 | 274 | 7.6e-06 | 25.2 | 0.0089 | 26.0 | 5.3 |
| pfu_aug1.0_20063.1_54634.t1 | 4 | 4 | LRR_6 | 288 | 304 | 1.3e-08 | 34.0 | 0.00073 | 2.2 | 8.6 |
| pfu_aug1.0_20063.1_54634.t1 | 3 | 3 | LRR_1 | 291 | 309 | 7.6e-06 | 25.2 | 0.00054 | 1.6 | 9.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20063.1_54634.t1 | gi|260821111|ref|XP_002605877.1| | hypothetical protein BRAFLDRAFT_87451 [Branchiostoma floridae] | 8.40779e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_20063.1_54634.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20063.1_54634.t1 atgccacgtaaagagatgcattgtttgaaatctcgacgatttttccaggacaaaggtttagaggtagtccctgaggaatc cgatgaagacgatttgcaacttgacatccccgagcaacaaatagacgacgatgacagaccgccgagtttgcgagtgccgt ctcaaaaatcacgtccagttctcgctagaacgccagcatcgaagcaacccgaatctcctctgttatttccagaagatatc aaagaggaagaagatgaacaaattctaataacagaaatcgatcaaggagagtataaggaagttgaatatccggttgatga tagtgacattgaactctcagacagtgaggatgtacctcatgttaccatagaaacggttgacgccgaacctacagaagagg attatgacacagatcttgaagtggaggagacagagacctttcatcaccacgacacctccggcaaatctcactatcgcaaa ttctgtaaccagctgggtatagtccccgtgtcttacttcctgagacatatagaagacacagaaatagccatgcggtacca cggtctgggtccgtcatcagccaaagccatcgctctagtgcttaaggataatatttctttagagaagcttgacattaggg gcaactggatagaatcggagggaggtgaatcagtcgccagaatgctagaagagaatgactatattacagacatatgctta gcagacaacaaacttggccttgaaggtatccaatcaatctgcagaatgttaaaggttaatgcagggttgaggaggatcga tttgtcagataatggattcgaagtaccagaagctgtagagcttgctcaagctatcgagaataacaaatacctcaaagtat taaacctgagtcataacagatttggagaaaaggctggcgaaattttaggaccagcaatcgaattcaagaaaaaggaaaaa aaagatgttccagttgaattcgaattcttgcgagtttgtgaagatattaaggccaagagaccgaacatcaaaattctcca tggacctgttctaagagccggcaacactgccgatgatcttgggaaacctggggtggatcttaatccgaagaagaaagatc cagtggtggtacttaaagaacacattgttgtgaatgactatagattattggatatactgaaaagatatgaccctgaggga agcatgacattggaaccagaacattttctagcagcaattgatgaattagcagtaccttttgacagggcaaagatagaaga agcagtaaacagattagtcgaccagaaaccgggagaagaacagggcagaatttactttggaaatttctttgatcaagaca agctacaggaacatatcaaaagactgcaagagaaacctgaagaagagacgtga |
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Protein
| Protein ID | pfu_aug1.0_20063.1_54634.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20063.1_54634.t1 MPRKEMHCLKSRRFFQDKGLEVVPEESDEDDLQLDIPEQQIDDDDRPPSLRVPSQKSRPVLARTPASKQPESPLLFPEDI KEEEDEQILITEIDQGEYKEVEYPVDDSDIELSDSEDVPHVTIETVDAEPTEEDYDTDLEVEETETFHHHDTSGKSHYRK FCNQLGIVPVSYFLRHIEDTEIAMRYHGLGPSSAKAIALVLKDNISLEKLDIRGNWIESEGGESVARMLEENDYITDICL ADNKLGLEGIQSICRMLKVNAGLRRIDLSDNGFEVPEAVELAQAIENNKYLKVLNLSHNRFGEKAGEILGPAIEFKKKEK KDVPVEFEFLRVCEDIKAKRPNIKILHGPVLRAGNTADDLGKPGVDLNPKKKDPVVVLKEHIVVNDYRLLDILKRYDPEG SMTLEPEHFLAAIDELAVPFDRAKIEEAVNRLVDQKPGEEQGRIYFGNFFDQDKLQEHIKRLQEKPEEET |
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