Gene
| Gene Model ID | pfu_aug1.0_2007.1_29946 |
|---|---|
| Locus | scaffold2007.1 : 22314 ... 31145 : - |
| To GenomeBrowser | scaffold2007.1:22314..31145 |
| Genes list of scaffold | scaffold2007.1 |
| Synonym | pfu_aug2.0_56.1_20123 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | NF-kappa B |
| Description | BLASTP best hit to NCBI Accession ABL63469 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2007.1_29946.t1 | 1 | 1 | RHD | 87 | 253 | 0.0 | 241.4 | 0.0 | 0.0 | 240.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2007.1_29946.t1 | gi|119351135|gb|ABL63469.1| | NF-kappa B [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_2007.1_29946.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2007.1_29946.t1 atggcaaatttaagtagtgcagacttgcagcgtttcatcctaggagatactgatgacactattatccagcaattagattt cactggacccacggataatgagtactcctatgtacagaatttaatagcccactcccagcctgcgcctcagcctgttcaga catacaacaatcctggaccatcccgtcagaatagatcgactacaaagccagggggaggtaaaagtatgcctcagaccact ccagacggaatatggactgagataatggaacagccgaaacagaggggcttacggttccgttatgagtgtgagggacgatc agctggtagcatccccggggagagcagcacaaatgagaagaagaccttcccaacaataaagattcacaactacactggta ctgctgtaatcgttgtgtcatgtgtcaccaaggacacaccatacgacccccacccccataatttggtgggcagggactgt aagaggggagtgtgcacactcaaggtcaaggacactaatactatcacctttccacatttgggcattcaatgtgctaaaaa gaaggatgtgacagataatctaaggcagcgcaaagagattaatgttgatccctatcaaagtggatttaagcatatgaata aagctaacaacatagatctgaacgtagtacgactctgtttccaagtcttcctgccggatgaccagggtaaaatcactcgc atcgtaccacctgtagtctcccatcctatacatgacaaaaaatctctgaatgagttagttatctgtagagtggacaggtc ctctggtaaagctaaaggtggagatgaggtgttcctattgtgtgagaaaataaacagagatgacataggagtgaggtttt accaggagaacagctctggtgatactatctgggaagattacggtgaattcagtgttaatgacatccatcgtcagtacgct atcgtgttcaaaacacccccgtataaagacaccctgataagtcaaccagtagaagtcagaatgcagctgaaacgacaaaa tgacgcagagacaagtgaagcgattcctttcatttatatgccagaagatcctgatccagaccgaatcatggagaagagaa aacgtaaggcagatcaactgaaaagctggggattcaacttggattcttccagcatgtctggagatgacatcaaacagaga ctgaagctcaaagccactaaatcaaggattaaagcagaagcccatacacctgacataccgctatgggacaacatagataa tgtaccaggtcctagccaatcagctgtcattgaatcatcctcatcctctgtgaacgtaaggtccagtgacaacacggcca tgggtaatgttacaatcactgcctcggaaaatgtgcaaaggcaactagctctattaccagaacaaattcaaaatcaaatt cttcaacagttggccatgcagaaactacgtgaccaagcgagactccgtcaaattgaggatagcctctctcagcctcctcc tacctcctctaatttcttaggtgatttcaattcccagaattcccaattcacaatggctcagcagcagactgcatcaggag ggcccctgataggtgatgtgtcaatgcagcaggcagctgctaacaatcaaaatgacatctcgcacgctgttgacttgaat atggtacaaacttacttaggtgaccaaggacaaaatgtgtctttcgatagtttcggttccctgacggggaacattatgaa catagattgtgatagcaatgtggcagctaatgttaacatcagcagtacggacacttcacagtcccaccagtacacgatgc agcagaatgaggtcgatgcagcaatccaatctctacagtctcaatcctga |
|
Protein
| Protein ID | pfu_aug1.0_2007.1_29946.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2007.1_29946.t1 MANLSSADLQRFILGDTDDTIIQQLDFTGPTDNEYSYVQNLIAHSQPAPQPVQTYNNPGPSRQNRSTTKPGGGKSMPQTT PDGIWTEIMEQPKQRGLRFRYECEGRSAGSIPGESSTNEKKTFPTIKIHNYTGTAVIVVSCVTKDTPYDPHPHNLVGRDC KRGVCTLKVKDTNTITFPHLGIQCAKKKDVTDNLRQRKEINVDPYQSGFKHMNKANNIDLNVVRLCFQVFLPDDQGKITR IVPPVVSHPIHDKKSLNELVICRVDRSSGKAKGGDEVFLLCEKINRDDIGVRFYQENSSGDTIWEDYGEFSVNDIHRQYA IVFKTPPYKDTLISQPVEVRMQLKRQNDAETSEAIPFIYMPEDPDPDRIMEKRKRKADQLKSWGFNLDSSSMSGDDIKQR LKLKATKSRIKAEAHTPDIPLWDNIDNVPGPSQSAVIESSSSSVNVRSSDNTAMGNVTITASENVQRQLALLPEQIQNQI LQQLAMQKLRDQARLRQIEDSLSQPPPTSSNFLGDFNSQNSQFTMAQQQTASGGPLIGDVSMQQAAANNQNDISHAVDLN MVQTYLGDQGQNVSFDSFGSLTGNIMNIDCDSNVAANVNISSTDTSQSHQYTMQQNEVDAAIQSLQSQS |
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