Gene
| Gene Model ID | pfu_aug1.0_2013.1_22832 |
|---|---|
| Locus | scaffold2013.1 : 27316 ... 40076 : + |
| To GenomeBrowser | scaffold2013.1:27316..40076 |
| Genes list of scaffold | scaffold2013.1 |
| Synonym | pfu_aug2.0_37.1_23299 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2013.1_22832.t1 | 2 | 1 | Clathrin_lg_ch | 2 | 41 | 0.0 | 174.5 | 4.5e-09 | 2.2e-05 | 24.4 |
| pfu_aug1.0_2013.1_22832.t1 | 2 | 2 | Clathrin_lg_ch | 95 | 225 | 0.0 | 174.5 | 0.0 | 4.2039e-45 | 154.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2013.1_22832.t1 | gi|327277261|ref|XP_003223384.1| | PREDICTED: clathrin light chain A isoform X3 [Anolis carolinensis] | 2.8026e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 2 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2013.1_22832.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2013.1_22832.t1 atggcagacttcgatgcattttcgtcgaatgaccaagttcctcagaacattgaagaggatccggccgctgatttcttggc tagagaacaaacagaacttgcaggattagaagatgacaatttcggcacagataattcagtacctcaaggtctttcaatta tctacttttcacattttatcttctcagttccgcccacttttttgtgtgtcattgagctgttgtgccgcaccggcgttatt attaatttacatatcatcgtcagatatagtacgaaatggggaacgaatggtccaacagacatgtatgctgctgtgtccca ggtggacaggcagagggcagagcccgagaagctgaggatttggagagaaaatcaagaagtcatgttacagaagaaagacg aagaagaggccgagaagaaagaagaatggagagaaatggccaagaaggaagtagacgactggtacaaacatcacggtgaa caagtggagaagactaaagaaacaaatcgggccgcggaggcttcctttgtaaaggacagggatactacacaaccaggagg cgagtgggagaaaatttgccgattgtgtgaattcaacccgaagaattccaaaaatacaaaagacgtatcgaggatgagat caattttgttgcaacttaagcagactcccttagttcgatga |
|
Protein
| Protein ID | pfu_aug1.0_2013.1_22832.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2013.1_22832.t1 MADFDAFSSNDQVPQNIEEDPAADFLAREQTELAGLEDDNFGTDNSVPQGLSIIYFSHFIFSVPPTFLCVIELLCRTGVI INLHIIVRYSTKWGTNGPTDMYAAVSQVDRQRAEPEKLRIWRENQEVMLQKKDEEEAEKKEEWREMAKKEVDDWYKHHGE QVEKTKETNRAAEASFVKDRDTTQPGGEWEKICRLCEFNPKNSKNTKDVSRMRSILLQLKQTPLVR |
|