Gene
| Gene Model ID | pfu_aug1.0_2013.1_22838 |
|---|---|
| Locus | scaffold2013.1 : 93406 ... 110209 : + |
| To GenomeBrowser | scaffold2013.1:93406..110209 |
| Genes list of scaffold | scaffold2013.1 |
| Synonym | pfu_aug2.0_37.1_23302 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2013.1_22838.t1 | 1 | 1 | HTH_Tnp_Tc5 | 140 | 173 | 1.1e-06 | 28.2 | 3.7e-10 | 1.4e-06 | 28.0 |
| pfu_aug1.0_2013.1_22838.t1 | 1 | 1 | DDE_1 | 202 | 408 | 0.0 | 195.5 | 0.0 | 0.0 | 194.4 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 1 | PUF | 879 | 911 | 0.0 | 223.7 | 7.0e-10 | 2.6e-06 | 26.5 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 2 | PUF | 915 | 945 | 0.0 | 223.7 | 1.8e-10 | 6.6e-07 | 28.4 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 3 | PUF | 951 | 978 | 0.0 | 223.7 | 2.9e-09 | 1.1e-05 | 24.6 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 4 | PUF | 987 | 1020 | 0.0 | 223.7 | 4.8e-12 | 1.8e-08 | 33.4 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 5 | PUF | 1023 | 1055 | 0.0 | 223.7 | 4.6e-13 | 1.7e-09 | 36.6 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 6 | PUF | 1066 | 1091 | 0.0 | 223.7 | 3.2e-10 | 1.2e-06 | 27.6 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 7 | PUF | 1095 | 1121 | 0.0 | 223.7 | 1.2e-06 | 0.0043 | 16.4 |
| pfu_aug1.0_2013.1_22838.t1 | 8 | 8 | PUF | 1142 | 1170 | 0.0 | 223.7 | 1.9e-11 | 7.0e-08 | 31.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2013.1_22838.t1 | gi|291238122|ref|XP_002738980.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2013.1_22838.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2013.1_22838.t1 atggtcgccaatggcgactgggcgagtgctaattttactccctgttacataatcactctccagaatgataacttgaatat actcattgaaagagaaggaacatggttctgtacacctctcatccgtatttgtctgttgattgaagataaatccataactt ttaaaaataacatctttatcatgcttcacccatatttcttcatatgtggacttaagtattttatagattatctacaaact ccctctgatcatactgatgtagtatgttttgttttcatgtttaacaataccagacgtggaagccgccaaaactcgccgag taacgatgacaaactcgcccagatgggaggcatggacatgcagaaactggcagccattaataatctcaagcctgacggag aattcatggacaaccatcaagaaaaagcgctacaattcgcaagtgagataggactggataatttcaaggcatcgaatggc tggttggagagctttcgatctcggtactcaattggtcactttaaagtctgtggagaaagtgctgacgttgacatgaaact ggtggaaaactataagtcaaatctcccatctatcgtcgcagaatattctcccgagaatgtattcaatgcagatgaaacgg gattattctttcgtgcgctgccggataaaactttagccagtaaaggcgaggaatgcaaggggggaaaactggcaaaggag cgacttactgtattgctgtgttgtagcgctaaaggcgagaaacttaaaccatttgtcattggcaaagcgctgaatccccg atgtttcaaacatttggataaaaaatctttccccgttacatggaatgcgaataaaaaagcatggatgacggatgcacttt ttacggaatggcttcaggagttgaataagggcatgaagagaaaaaatcgtaaaatagtgttgttcatcgataatgcgact tcacacggacacttaaccctcagccacgtgaccttaaaatttctgccggctaatacgacctcaaaattacagcccctgga tcttggaatcatacgagcattcaaggcacgctatagaaaacgtatgataaaacatttattggccaaaatggacgaaattc aaagggcttccgagttgtgcaaaggcataaccgttttaaatgctgtttattggatatcaaaatcttgggaagagacaaag gggagtaccatagagagctgctttcagaaagcagggttttctgcaattgaccctgatcgtaatgatgacgacgattccga cgatgacgatgatattccgttagcacagctcgcatcgcttcgttccgagggcgttattgacattaatattgacgataacc tgcaaaccgaatcatgtgatccagatgaatgggaaaatgcattgttatctgaatatcaaacacgtgataatgctacacaa tcggccgatagtagtagcgatgacgaggcttgcgagtctgaatcctgtgacaatgatttgaatcacaaatctgtgcttga aatgttgcagaggatgcgaaatttcgctattcaaaacgatagtgactacttagctcacgttgaagaactgatatctatga cggaggacaaactcataaaatcgaagtccgaatgaccaggatttcatctagatgccccacccccttttgatcctgttggc atagatcctgtccagtttgactacaacaatatagctccaccctctatggacagtccaaactttaataacatggactataa ccagcaacagcttcttcagcgtcaacaacagccaatagcagttcttactcaacaacagtatgctctggccgcacaacaac aacagcttggacttactccaactgggctaccagctccatatgtcataagccaggatccttatgctgttggtatacccata gcaggacctgcagtgatccaccctcagtattatggagtccaaggtccatggggtatatatccagctaatctcatccaaca acaaggtcagcacacgccgcagggattgacgcaacaacaacaacagcaacagcaacaacaacagatgatgaggagccagt ctggtcgtcctcttacaccacaacaaaatgacaacatggcacaacagaacatgcaggctcctgccctacagacacctaat ccacagtatcagattcttgcaccagcttactatgatcagaatggccaattagtgatgggcaatcctcggggactgggcac gcctgtacgtttggtatctcctgcccctgtcctagtcagtgccactgccaatcaacaaggtggggctttaggaaatagcc ctctacgtctcctaaccacacagggccaacaaatgcctaccactccaccagtcaatttctccagtaacaacaattctaat aatcaaaataacatggttctacggatctatgggctccatgggcagtatgtctgcctcacccgctggacccatgggcttag tacaaactggacaaagtatgacacccccaccttcactctctggatcttcatcaaatctatcattagtgccagtcttacaa aagaagttacaggtagaagtcgacttcttgaagatttcagaaataatcgcataccaaacctccagcttaaagacctcacc aatcatgtagtggaattttcacaggatcaacatgggtctagattcattcaacagaagttggagagagcatcatcacaaga gaagtctatggttttcaacgaaattctggcctctgcatatcaattaatgacggacgtgttcggaaactatgtaatccaga aattctttgaatttggtgcgacggatcagaaacagaccttagcccagaggttgagaggtcacgtattacagttagctcta cagatgtatggatgtagggtaatacagaaagccctagaaactattccacaggaaatgcaggtggaaattgtcaaggaact tgacggtcatgtgttaaaatgtgtaaaggaccaaaatggaaaccatgttgtacagaagtgtattgaatgtgtcgaccctg tccatcttcagttcattattgatgcatttaaaggacaggtacttaatttgtccacccacccatatggctgccgagtgatt cagagaattctggagcattgtactaaagatcagacaactcctgttttggaggaacttcatcaagctaccgaacgcttggt acaggaccaatacggaaactatgttatacagcacgtgctggaacacggacaaccggaggataaaagtaaaattgtcgcag aactacgaggaaaagtactcatactcagccagcataaatttgcaagtaatgtggtggagaaatgtgtatcccattcatca cgagcagagaaagccatgctggtagaggaggtctgcaatatgagtgacgggccacacagtgccttgtatacgatgatgaa ggaccagtttgctaattacgttgttcagaaaatgattgacgttgccgagccaactcaaaggaagatcctcatgcacaaga tccggcctcatattgccacgctccgaaaatacacctacggcaaacatatccttgccaagctcgagaagttcttcatgaag aataactcggatctcggaccaatcggaatgccccctaacggtgctctaccgtga |
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Protein
| Protein ID | pfu_aug1.0_2013.1_22838.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2013.1_22838.t1 MVANGDWASANFTPCYIITLQNDNLNILIEREGTWFCTPLIRICLLIEDKSITFKNNIFIMLHPYFFICGLKYFIDYLQT PSDHTDVVCFVFMFNNTRRGSRQNSPSNDDKLAQMGGMDMQKLAAINNLKPDGEFMDNHQEKALQFASEIGLDNFKASNG WLESFRSRYSIGHFKVCGESADVDMKLVENYKSNLPSIVAEYSPENVFNADETGLFFRALPDKTLASKGEECKGGKLAKE RLTVLLCCSAKGEKLKPFVIGKALNPRCFKHLDKKSFPVTWNANKKAWMTDALFTEWLQELNKGMKRKNRKIVLFIDNAT SHGHLTLSHVTLKFLPANTTSKLQPLDLGIIRAFKARYRKRMIKHLLAKMDEIQRASELCKGITVLNAVYWISKSWEETK GSTIESCFQKAGFSAIDPDRNDDDDSDDDDDIPLAQLASLRSEGVIDINIDDNLQTESCDPDEWENALLSEYQTRDNATQ SADSSSDDEACESESCDNDLNHKSVLEMLQRMRNFAIQNDSDYLAHVEELISMTEDKLIKSKSEXPGFHLDAPPPFDPVG IDPVQFDYNNIAPPSMDSPNFNNMDYNQQQLLQRQQQPIAVLTQQQYALAAQQQQLGLTPTGLPAPYVISQDPYAVGIPI AGPAVIHPQYYGVQGPWGIYPANLIQQQGQHTPQGLTQQQQQQQQQQQMMRSQSGRPLTPQQNDNMAQQNMQAPALQTPN PQYQILAPAYYDQNGQLVMGNPRGLGTPVRLVSPAPVLVSATANQQGGALGNSPLRLLTTQGQQMPTTPPVNFSSNNNSN NQNNMVLRIYGLHGQYVCLTRWTHGLSTNWTKYDTPTFTLWIFIKSIISASLTKEVTGRSRLLEDFRNNRIPNLQLKDLT NHVVEFSQDQHGSRFIQQKLERASSQEKSMVFNEILASAYQLMTDVFGNYVIQKFFEFGATDQKQTLAQRLRGHVLQLAL QMYGCRVIQKALETIPQEMQVEIVKELDGHVLKCVKDQNGNHVVQKCIECVDPVHLQFIIDAFKGQVLNLSTHPYGCRVI QRILEHCTKDQTTPVLEELHQATERLVQDQYGNYVIQHVLEHGQPEDKSKIVAELRGKVLILSQHKFASNVVEKCVSHSS RAEKAMLVEEVCNMSDGPHSALYTMMKDQFANYVVQKMIDVAEPTQRKILMHKIRPHIATLRKYTYGKHILAKLEKFFMK NNSDLGPIGMPPNGALP |
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