Gene
| Gene Model ID | pfu_aug1.0_20233.1_40223 |
|---|---|
| Locus | scaffold20233.1 : 3556 ... 15280 : - |
| To GenomeBrowser | scaffold20233.1:3556..15280 |
| Genes list of scaffold | scaffold20233.1 |
| Synonym | pfu_aug2.0_5074.1_16063 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20233.1_40223.t1 | 1 | 1 | zf-AN1 | 25 | 63 | 1.8e-10 | 40.5 | 2.1e-14 | 3.0e-10 | 39.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20233.1_40223.t1 | gi|348503682|ref|XP_003439393.1| | PREDICTED: AN1-type zinc finger protein 1-like isoform X1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_20233.1_40223.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20233.1_40223.t1 atgccaatgatccacaatgactttgttcagaaagagaactatgagccattcacaggtaccaagagttattgttgtgattt tacagaatgtgatagaagagagctcatgcagatcatctgtcaacactgccacaggaacttctgtctaacgcacaggcatc aacaagatcattcatgtccaaatatagaagttaaagaaactccagtctataaaactgccgaacatgtacagaagataatt gattccaagaatcaaatacccaagaagacacccactaggaagaaacagagtaaaaccgctgcaaaggtagctttaatgaa gatgaaaatgaaagccacaggtgacaaaggaataccgcaggaagatcgagtgtttctggaagtttatctgccactagggg gaggtgtgaagtcaaaacctttgttcttctcaaagacttggtcagtaggtagagtcattgacagtgcagcagacaaatcc agtcttgttaatacaaacaatacagctagtgaaaagaaactacgactgttttcagcagacgatggccgtagatatcagat agatagaaatctagaaggactattgtcagaggacagtttactgaatggtggcaatgtgatattagaatatgtgactagtt actgtgatttattatcagatctcaacctatatttatcttga |
|
Protein
| Protein ID | pfu_aug1.0_20233.1_40223.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20233.1_40223.t1 MPMIHNDFVQKENYEPFTGTKSYCCDFTECDRRELMQIICQHCHRNFCLTHRHQQDHSCPNIEVKETPVYKTAEHVQKII DSKNQIPKKTPTRKKQSKTAAKVALMKMKMKATGDKGIPQEDRVFLEVYLPLGGGVKSKPLFFSKTWSVGRVIDSAADKS SLVNTNNTASEKKLRLFSADDGRRYQIDRNLEGLLSEDSLLNGGNVILEYVTSYCDLLSDLNLYLS |
|