Gene
| Gene Model ID | pfu_aug1.0_2034.1_15686 |
|---|---|
| Locus | scaffold2034.1 : 22336 ... 39329 : + |
| To GenomeBrowser | scaffold2034.1:22336..39329 |
| Genes list of scaffold | scaffold2034.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2034.1_15686.t1 | 2 | 1 | Collagen | 107 | 125 | 6.5e-12 | 44.8 | 7.5e-06 | 0.11 | 12.0 |
| pfu_aug1.0_2034.1_15686.t1 | 2 | 2 | Collagen | 157 | 208 | 6.5e-12 | 44.8 | 1.5e-13 | 2.2e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2034.1_15686.t1 | gi|328721781|ref|XP_003247404.1| | 9.0e-19 |
Transcript
| Transcript ID | pfu_aug1.0_2034.1_15686.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2034.1_15686.t1 atgaacaggtcttggaatttatggcgcaaacgtgccactttcaatcgatggcatcggataggaatcagtatcacaggaca aatgtttaccgcctggtttgactgtaatatccaaaaggaaaatgtattatttaaccgaagcaaagaggcgggacgtgctt tcagccaagaaggtttagtattcctcggacgtgacctcaacgactcaccggaatttaagatcatcgatgccatagaattt acattacattacgtatatgatctcaaaaaggaaaatacatatcatcctcaaatccaccgatccactattgacagtcaagg cttttctggaagagacggtattccgggagcagtaggaagagttggtcccccaggccacgtttttatcattccgatgaact ggaattccaagacaggagctcaggcacaagcattccggcagatgctttctcaacatatggttgcaatgagaggtacacct ggaccgcagggaatgacgggaaatgctggacctccaggaccacaaggagaggaaggtttaaaaggagacgtgggcaaccc aggtgaacagggacgacctggttatgatggagaccgtggagagctaggacctcctggtgacaaggaccaagaggacgacc aggaccaatgggctcgccgggcgtaccaggttcggaaggatcaactggaccaaagggtaatcagggtaacactggtggcc caggagctccaggacagtcaggtgcacccggaccattgggccttccaggacaagatggtccagtag |
|
Protein
| Protein ID | pfu_aug1.0_2034.1_15686.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2034.1_15686.t1 MNRSWNLWRKRATFNRWHRIGISITGQMFTAWFDCNIQKENVLFNRSKEAGRAFSQEGLVFLGRDLNDSPEFKIIDAIEF TLHYVYDLKKENTYHPQIHRSTIDSQGFSGRDGIPGAVGRVGPPGHVFIIPMNWNSKTGAQAQAFRQMLSQHMVAMRGTP GPQGMTGNAGPPGPQGEEGLKGDVGNPGEQGRPGYDGDRGELGPPGDKDQEDDQDQWARRAYQVRKDQLDQRVIRVTLVA QELQDSQVHPDHWAFQDKMVQ |
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