Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_204570.1_06864
Locus scaffold204570.1 : 1 ... 740 : -
To GenomeBrowser scaffold204570.1:1..740
Genes list of scaffold scaffold204570.1
Synonym pfu_aug2.0_2903.1_12311

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_204570.1_06864.t1 2 1 NDK 8 48 6.0e-12 45.5 2.1e-15 3.1e-11 43.2
pfu_aug1.0_204570.1_06864.t1 2 2 NDK 61 82 6.0e-12 45.5 0.036 540.0 0.3

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_204570.1_06864.t1
Definition-
>pfu_aug1.0_204570.1_06864.t1
cacaaaggtttttcagacaatgcatcaccaccctgaaaccatcaggggccgttatggtctgacagacaccaggaatgcca
ctcacggctctgactctgaggaaaccgcaaaacgagaaatcagcttcttttttccagagtttgacgttgatgaatggtat
aaaaaggaagaagtttactttaggcaagggagtgtcaaatattgtgaagagaattttgttcataaaccttcatgtaatga
aacctccgagttttctaaagtatga

Protein
Protein IDpfu_aug1.0_204570.1_06864.t1
Definition-
>pfu_aug1.0_204570.1_06864.t1
TKVFQTMHHHPETIRGRYGLTDTRNATHGSDSEETAKREISFFFPEFDVDEWYKKEEVYFRQGSVKYCEENFVHKPSCNE
TSEFSKV

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