Gene
Gene Model ID | pfu_aug1.0_2046.1_29956 |
---|---|
Locus | scaffold2046.1 : 10402 ... 34518 : - |
To GenomeBrowser | scaffold2046.1:10402..34518 |
Genes list of scaffold | scaffold2046.1 |
Synonym | pfu_aug2.0_73.1_10231 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | Hox1-like |
Description | NCBI BLASTP hit to dbj|BAK40158.1| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2046.1_29956.t1 | 1 | 1 | Homeobox | 215 | 269 | 1.5e-23 | 82.1 | 3.0e-27 | 2.3e-23 | 81.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2046.1_29956.t1 | gi|336390933|dbj|BAK40158.1| | Hox1 [Nipponacmea fuscoviridis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_2046.1_29956.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2046.1_29956.t1 atgaattcagaaggtgactacacgatttgtaatttagacagccattcttatggaaatagctacacatcgtccgacatacc aaacgcaatctatggatacggtaataatataagtgcacggacagttgacactggacagcaatattatggatctgaaaata tcatccctcatggactgtccggagttgacctctcgctgaccaatggtcaaggattaaactatcctgtgaattctgccgtg gcaccaagagtctcgcgtcaccaaggttatcatgatctgggggactctggtcagactcacatggtggacccctatcttac cccacatcacgggctggcgctcaatggagacgcccacatccccgggggtaacggaatgaacttatctcctggtcggggga gttacggtggctcttgtacggacaatttgacttcttgctcactttcaaacgtttatggggccacgattccaccacaagct cagtctccaataaaacaagaaccgtcaacgggacagaatttagcaagtaaaccgtatcggtggatgcaaataaaaagaaa tgcacctaaaccagctccaaaaccaactagtccagagtacggatatccccccacaaccggcggagcacctcagccaaata tgggtcggacgaattttacaaataaacagttgacggaattggagaaagaattccatttcaacaaatatctcacgagagcg aggcgaatcgagatcgccgcttctcttggtctgaacgagactcaggtaaaaatatggtttcaaaacagaagaatgaagca gaaaaagaggttaagagaagcacaattcgaaagtagtcgggacgggtgctccataggtttggatggaattaccatgacag caatgtctctttgccaggaggggagataa |
Protein
Protein ID | pfu_aug1.0_2046.1_29956.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2046.1_29956.t1 MNSEGDYTICNLDSHSYGNSYTSSDIPNAIYGYGNNISARTVDTGQQYYGSENIIPHGLSGVDLSLTNGQGLNYPVNSAV APRVSRHQGYHDLGDSGQTHMVDPYLTPHHGLALNGDAHIPGGNGMNLSPGRGSYGGSCTDNLTSCSLSNVYGATIPPQA QSPIKQEPSTGQNLASKPYRWMQIKRNAPKPAPKPTSPEYGYPPTTGGAPQPNMGRTNFTNKQLTELEKEFHFNKYLTRA RRIEIAASLGLNETQVKIWFQNRRMKQKKRLREAQFESSRDGCSIGLDGITMTAMSLCQEGR |