Gene
| Gene Model ID | pfu_aug1.0_205.1_22084 |
|---|---|
| Locus | scaffold205.1 : 24126 ... 41064 : + |
| To GenomeBrowser | scaffold205.1:24126..41064 |
| Genes list of scaffold | scaffold205.1 |
| Synonym | pfu_aug2.0_445.1_17437 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_205.1_22084.t1 | 6 | 1 | PPTA | 67 | 96 | 0.0 | 162.7 | 6.4e-14 | 4.8e-10 | 38.3 |
| pfu_aug1.0_205.1_22084.t1 | 6 | 2 | PPTA | 102 | 132 | 0.0 | 162.7 | 9.5e-14 | 7.1e-10 | 37.8 |
| pfu_aug1.0_205.1_22084.t1 | 6 | 3 | PPTA | 136 | 165 | 0.0 | 162.7 | 1.7e-13 | 1.3e-09 | 37.0 |
| pfu_aug1.0_205.1_22084.t1 | 6 | 4 | PPTA | 170 | 198 | 0.0 | 162.7 | 1.5e-10 | 1.1e-06 | 27.6 |
| pfu_aug1.0_205.1_22084.t1 | 6 | 5 | PPTA | 209 | 235 | 0.0 | 162.7 | 2.9e-11 | 2.2e-07 | 29.9 |
| pfu_aug1.0_205.1_22084.t1 | 6 | 6 | PPTA | 289 | 298 | 0.0 | 162.7 | 0.33 | 2400.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_205.1_22084.t1 | gi|73979092|ref|XP_532786.2| | PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoformX1 [Canis lupus familiaris] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_205.1_22084.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_205.1_22084.t1 atgtcggacagcagctcagacgagggaaactcatccctggaatgggttccctataaggacagggagacatggaaagatgt cgacccagtacctcaagacgacggaccaaacccaatagtacaaattgcgtactcagataaattcagagacgtgtatgact attttcgtgctgtagttgcaaagaaagaaataagtgacagggcattagaactgacaaaggatgcagcggaactaaactca gctaattataccgtatggcattatagaaggatccttctaaaagagcttggtaaggatctgagagatgaaatgacctacat aacaaagaccatcaagagacatcccaaaaactaccaagtatggcatcatagacgtgtaatggtagagtggttaaatgatc cgtcccaggaactgggttttactgcagtaattctgaaaggtgacgcaaaaaattaccatgcatggcaacacagacaatgg gtgatcaaagaatataacctatgggagaaggaattggagtatgtagatgaattactgcatcaagatttacgtaataactc agcgtggaatcagagatattttgtcattaacaatactacaggattcaaacaagatgtggtagagagggaagtcaagtaca cacaagaatttataaagaaagctccaaataatgagagtgcgtggaattatttaaaaggggtgttgttagattttgaccta cataaatggccaggcttgttggagttctgtatgaagctgtacgaggaacgatatcgttctccctaccttatagcatgtat ggtggacgcttacgaggaaatgttagaacaaaaatgtggagagaaaaactctgtacttagtaaagcactggagctttgca actctctagcattggaatacgacacaatacgtagcgagtattggaattatgtatcacgagttctgtccaataaatttggc gaggccccagtatcaaaacctgtggacgtggggtcatga |
|
Protein
| Protein ID | pfu_aug1.0_205.1_22084.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_205.1_22084.t1 MSDSSSDEGNSSLEWVPYKDRETWKDVDPVPQDDGPNPIVQIAYSDKFRDVYDYFRAVVAKKEISDRALELTKDAAELNS ANYTVWHYRRILLKELGKDLRDEMTYITKTIKRHPKNYQVWHHRRVMVEWLNDPSQELGFTAVILKGDAKNYHAWQHRQW VIKEYNLWEKELEYVDELLHQDLRNNSAWNQRYFVINNTTGFKQDVVEREVKYTQEFIKKAPNNESAWNYLKGVLLDFDL HKWPGLLEFCMKLYEERYRSPYLIACMVDAYEEMLEQKCGEKNSVLSKALELCNSLALEYDTIRSEYWNYVSRVLSNKFG EAPVSKPVDVGS |
|