Gene
| Gene Model ID | pfu_aug1.0_20500.1_54676 |
|---|---|
| Locus | scaffold20500.1 : 8808 ... 23995 : - |
| To GenomeBrowser | scaffold20500.1:8808..23995 |
| Genes list of scaffold | scaffold20500.1 |
| Synonym | pfu_aug2.0_83.1_10233 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20500.1_54676.t1 | 3 | 1 | HEAT_EZ | 2 | 56 | 6.3e-18 | 64.6 | 1.6e-10 | 3.0e-07 | 30.7 |
| pfu_aug1.0_20500.1_54676.t1 | 3 | 1 | HEAT_2 | 5 | 63 | 2.0e-17 | 63.2 | 2.9e-08 | 5.4e-05 | 23.4 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 1 | Arm | 6 | 16 | 0.0 | 176.4 | 0.00049 | 0.92 | 9.4 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 1 | HEAT | 7 | 17 | 1.5e-12 | 46.4 | 0.55 | 1000.0 | 0.2 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 2 | Arm | 20 | 57 | 0.0 | 176.4 | 1.2e-16 | 2.1e-13 | 49.5 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 2 | HEAT | 31 | 57 | 1.5e-12 | 46.4 | 4.5e-07 | 0.00084 | 19.2 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 3 | Arm | 60 | 96 | 0.0 | 176.4 | 0.00049 | 0.9 | 9.4 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 3 | HEAT | 73 | 96 | 1.5e-12 | 46.4 | 0.53 | 990.0 | 0.3 |
| pfu_aug1.0_20500.1_54676.t1 | 3 | 2 | HEAT_2 | 81 | 141 | 2.0e-17 | 63.2 | 8.3e-07 | 0.0015 | 18.7 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 4 | Arm | 102 | 139 | 0.0 | 176.4 | 4.7e-14 | 8.7e-11 | 41.2 |
| pfu_aug1.0_20500.1_54676.t1 | 3 | 2 | HEAT_EZ | 110 | 137 | 6.3e-18 | 64.6 | 3.0e-07 | 0.00055 | 20.3 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 4 | HEAT | 112 | 138 | 1.5e-12 | 46.4 | 1.3e-06 | 0.0025 | 17.7 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 5 | Arm | 142 | 180 | 0.0 | 176.4 | 8.3e-12 | 1.5e-08 | 34.0 |
| pfu_aug1.0_20500.1_54676.t1 | 3 | 3 | HEAT_2 | 151 | 213 | 2.0e-17 | 63.2 | 9.7e-06 | 0.018 | 15.3 |
| pfu_aug1.0_20500.1_54676.t1 | 3 | 3 | HEAT_EZ | 153 | 178 | 6.3e-18 | 64.6 | 0.00075 | 1.4 | 9.5 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 5 | HEAT | 154 | 177 | 1.5e-12 | 46.4 | 0.5 | 920.0 | 0.4 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 6 | Arm | 184 | 223 | 0.0 | 176.4 | 1.1e-12 | 2.0e-09 | 36.9 |
| pfu_aug1.0_20500.1_54676.t1 | 6 | 6 | HEAT | 197 | 223 | 1.5e-12 | 46.4 | 0.15 | 280.0 | 2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20500.1_54676.t1 | gi|260790515|ref|XP_002590287.1| | hypothetical protein BRAFLDRAFT_279360 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_20500.1_54676.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20500.1_54676.t1 atgcctgtcgaatttgaagcagcttgggccttaaccaacattgcctcggggacatctctacagacacaagtggtgattaa cgcaggtgccgtgcctatatttatagctttactgagctccgatatagaggatgtacaggagcaggccgtatgggccctgg gtaatattgccggagacagccctgaatgtagagattatgtactcagctatggaatactggtccccttattacagtactac catcaaagtgtgatatcagcagcactaagagtggtgggtaatattgtcactggtgatgattttcaaacacaagtcatatt gaattgttcagccttaccttgtcttctacacttactcagcaactcaaaagagtcaatacggaaagaggcctgctggacga tatcaaatatcacagctggtaataggatgcagatacagtgtgtgatagatgccaacatatttccagtcctgatagacatt cttggtaaagcagattttaaaacgaggaaagaagcagcatgggcgattactaatgccacatcaggagggtcaccagaaca aatcaggtttttagtagatcagggctgtatacctcctctctgtgatttattgactgtgatggacgctaagatagtacaag tggcattgaatggcttagaaaacatactacggctcggtgaacaagacgccaaaaaccacagtggtactaatccttatgta gtaatgatagaagaatgttacggccttgataagattgaatttcttcaaagtcatcaaaatagagaaatttatcagaaagc ttttgacatgattgaacgttactttggtacggaagaagaggacaagaacctagcaccgcaagtggacgaaagtgcacaac agtaccagtttaacgcaggagaaaatgagcaaatgggagagtttcagttctaa |
|
Protein
| Protein ID | pfu_aug1.0_20500.1_54676.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20500.1_54676.t1 MPVEFEAAWALTNIASGTSLQTQVVINAGAVPIFIALLSSDIEDVQEQAVWALGNIAGDSPECRDYVLSYGILVPLLQYY HQSVISAALRVVGNIVTGDDFQTQVILNCSALPCLLHLLSNSKESIRKEACWTISNITAGNRMQIQCVIDANIFPVLIDI LGKADFKTRKEAAWAITNATSGGSPEQIRFLVDQGCIPPLCDLLTVMDAKIVQVALNGLENILRLGEQDAKNHSGTNPYV VMIEECYGLDKIEFLQSHQNREIYQKAFDMIERYFGTEEEDKNLAPQVDESAQQYQFNAGENEQMGEFQF |
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