Gene
| Gene Model ID | pfu_aug1.0_2053.1_08213 |
|---|---|
| Locus | scaffold2053.1 : 1 ... 31245 : - |
| To GenomeBrowser | scaffold2053.1:1..31245 |
| Genes list of scaffold | scaffold2053.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2053.1_08213.t1 | 5 | 1 | Cadherin | 25 | 75 | 0.0 | 199.3 | 8.1e-10 | 4.0e-06 | 26.9 |
| pfu_aug1.0_2053.1_08213.t1 | 5 | 2 | Cadherin | 90 | 180 | 0.0 | 199.3 | 1.4e-17 | 7.1e-14 | 51.8 |
| pfu_aug1.0_2053.1_08213.t1 | 5 | 3 | Cadherin | 199 | 308 | 0.0 | 199.3 | 3.1e-16 | 1.5e-12 | 47.5 |
| pfu_aug1.0_2053.1_08213.t1 | 5 | 4 | Cadherin | 328 | 408 | 0.0 | 199.3 | 1.9e-09 | 9.2e-06 | 25.8 |
| pfu_aug1.0_2053.1_08213.t1 | 5 | 5 | Cadherin | 423 | 513 | 0.0 | 199.3 | 2.2e-17 | 1.1e-13 | 51.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2053.1_08213.t1 | gi|241811212|ref|XP_002414573.1| | cadherin-repeats domain-containing protein [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2053.1_08213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2053.1_08213.t1 atgctctatttaaggagattgttctacaccactactgtgcgttcatcgatacctctagtgcatcacgtcaacatgccgta cactatcaacagtgattctggaaatataacagtaaatggtaccctggatcgcgagaagagagattcttacgcttttacaa ttatggcaaaacaaaccgacaaacctttactgagacgtgctacatcattggtttatgtacaaatagttgatgtcaacgat aacagccctgttatgtctgaaccaacatacaatgtatccataccagagaatcttcctgatggaacctttgtattgaaagt tggagccacagatctggatagaggaaataacagcttatttggatttcaattactcggaaactactcaccgtttaaaattg accaaagtggagtgatcactgtgaaaaatgcgagtctgctggacagagaacaaacacaaattttcacatttgaggtccaa gcttttgaaacagcgacgacagaaaaacgagcaagtggaaagtcttcggtgaaaattacattaatagacgaaaatgataa tagtcctgagttcactgcttcaaataagcgagtgatttacgtgaacaaaactactccagtaaattcttcgatagcacggg taacagcatttgacagagacaacgataataacggtaaagtcacgtattcaatatccagctctgatgattccatccgaaaa ttcaagatagactccaataccggagacataaaagtggcagagcctctgatgagcaaaccaacgatagacctcagtaaggg cactgctgatatagtcctggaactggagaagaatttaacctggagttacacattcgacgttgtggcatcggacaatgaca aaaaagaaagaagaaagacagcaattacactgaagattgatatactagatgagaatgtttatcccccgtttattgtgttt ccaccggctgctactacgaagcttcagatctctgaaaattttccgataaataccataattctgaaaatagaggcacttga tttagatcccaaagacatagcctctctcgtcataacggttgatccatatccttttacagtttatggtggaaacattataa ttctgagagagaagctagaccgtgaaaagctctccacctataaccttaaagtcaatgtgtctgatggtaaacatgaaaac ataaccacctacagagttgaagtacaagacgaaaacgacaatgctcctcaattcgctacgaaaatatacaacttcagtat tattgaagaaaaggaaaatattcagatcggtgaagtgaatgctactgatggagacgtcggcataaatgccgaatttgatt acagcattttaccaagtttatggtccggtaactttacaatatttgccaatggatccatatctactgtttcaaaaatagat agggagtcattgaaaaattccaaaatctctttacttgtccaagcagtagatcgtggacgtccaaatctgacgggaacaac agttgtaaatattgaagtgaaggacataaacgataatgcccctgtttttcttgatgacgatgcaatttgtacaactgacg aattgactgtcaaggataacttctgtcgagtaaaggatataaataatcggggacctgtgttttccaaatcttcatatgat tattttgttcctgaaggcaaagctggaaccttaccaggggactgaatttgtgaagaaaccgtcttcatggtcgtcatgga tcctgcatccgacaaaagctga |
|
Protein
| Protein ID | pfu_aug1.0_2053.1_08213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2053.1_08213.t1 MLYLRRLFYTTTVRSSIPLVHHVNMPYTINSDSGNITVNGTLDREKRDSYAFTIMAKQTDKPLLRRATSLVYVQIVDVND NSPVMSEPTYNVSIPENLPDGTFVLKVGATDLDRGNNSLFGFQLLGNYSPFKIDQSGVITVKNASLLDREQTQIFTFEVQ AFETATTEKRASGKSSVKITLIDENDNSPEFTASNKRVIYVNKTTPVNSSIARVTAFDRDNDNNGKVTYSISSSDDSIRK FKIDSNTGDIKVAEPLMSKPTIDLSKGTADIVLELEKNLTWSYTFDVVASDNDKKERRKTAITLKIDILDENVYPPFIVF PPAATTKLQISENFPINTIILKIEALDLDPKDIASLVITVDPYPFTVYGGNIIILREKLDREKLSTYNLKVNVSDGKHEN ITTYRVEVQDENDNAPQFATKIYNFSIIEEKENIQIGEVNATDGDVGINAEFDYSILPSLWSGNFTIFANGSISTVSKID RESLKNSKISLLVQAVDRGRPNLTGTTVVNIEVKDINDNAPVFLDDDAICTTDELTVKDNFCRVKDINNRGPVFSKSSYD YFVPEGKAGTLPGDXICEETVFMVVMDPASDKS |
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