Gene
| Gene Model ID | pfu_aug1.0_20536.1_62014 |
|---|---|
| Locus | scaffold20536.1 : 1138 ... 10015 : - |
| To GenomeBrowser | scaffold20536.1:1138..10015 |
| Genes list of scaffold | scaffold20536.1 |
| Synonym | pfu_aug2.0_58.1_26765 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20536.1_62014.t1 | 1 | 1 | Ribosomal_S30 | 29 | 70 | 1.1e-15 | 57.0 | 1.7e-19 | 1.2e-15 | 56.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20536.1_62014.t1 | gi|22758876|gb|AAN05597.1| | ribosomal protein S30 [Argopecten irradians] | 4.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_20536.1_62014.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20536.1_62014.t1 atgctactcaacagctttgacgacctgtccacgttggacgtagatgtacgcatgctcggagtggttaaaagtctatcttc atttcaggtggataaacaagagaagaagaagtcaaagactggacgtgcaaagcgtcgcatgcagtacaacaggagatttg gtgttgtcgtttctacgtttggacgcaggaagggacctaatgcgaactcttaa |
|
Protein
| Protein ID | pfu_aug1.0_20536.1_62014.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20536.1_62014.t1 MLLNSFDDLSTLDVDVRMLGVVKSLSSFQVDKQEKKKSKTGRAKRRMQYNRRFGVVVSTFGRRKGPNANS |
|