Gene
| Gene Model ID | pfu_aug1.0_20546.1_33113 |
|---|---|
| Locus | scaffold20546.1 : 9246 ... 11837 : + |
| To GenomeBrowser | scaffold20546.1:9246..11837 |
| Genes list of scaffold | scaffold20546.1 |
| Synonym | pfu_aug2.0_324.1_13997 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20546.1_33113.t1 | 4 | 1 | EF-hand_6 | 42 | 66 | 2.7e-09 | 36.1 | 0.0018 | 4.5 | 7.4 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 1 | EF-hand_1 | 43 | 65 | 1.1e-14 | 52.4 | 8.5e-05 | 0.21 | 10.9 |
| pfu_aug1.0_20546.1_33113.t1 | 3 | 1 | EF-hand_7 | 43 | 65 | 2.6e-11 | 43.4 | 0.00011 | 0.27 | 11.4 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 1 | EF-hand_5 | 48 | 54 | 5.9e-09 | 34.8 | 0.04 | 99.0 | 2.5 |
| pfu_aug1.0_20546.1_33113.t1 | 3 | 1 | EF-hand_8 | 49 | 82 | 6.2e-07 | 28.9 | 0.00016 | 0.39 | 10.3 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 2 | EF-hand_1 | 62 | 85 | 1.1e-14 | 52.4 | 1.2e-06 | 0.003 | 16.7 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 2 | EF-hand_6 | 62 | 85 | 2.7e-09 | 36.1 | 5.7e-05 | 0.14 | 12.1 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 2 | EF-hand_5 | 65 | 82 | 5.9e-09 | 34.8 | 0.00044 | 1.1 | 8.7 |
| pfu_aug1.0_20546.1_33113.t1 | 3 | 2 | EF-hand_7 | 66 | 116 | 2.6e-11 | 43.4 | 6.7e-08 | 0.00016 | 21.6 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 3 | EF-hand_1 | 97 | 116 | 1.1e-14 | 52.4 | 1.9e-06 | 0.0047 | 16.1 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 3 | EF-hand_6 | 99 | 116 | 2.7e-09 | 36.1 | 3.4e-05 | 0.085 | 12.7 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 3 | EF-hand_5 | 99 | 115 | 5.9e-09 | 34.8 | 1.6e-05 | 0.038 | 13.3 |
| pfu_aug1.0_20546.1_33113.t1 | 3 | 2 | EF-hand_8 | 99 | 115 | 6.2e-07 | 28.9 | 0.00036 | 0.89 | 9.2 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 4 | EF-hand_1 | 121 | 142 | 1.1e-14 | 52.4 | 4.9e-06 | 0.012 | 14.8 |
| pfu_aug1.0_20546.1_33113.t1 | 3 | 3 | EF-hand_7 | 121 | 144 | 2.6e-11 | 43.4 | 6.4e-05 | 0.16 | 12.1 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 4 | EF-hand_6 | 121 | 141 | 2.7e-09 | 36.1 | 0.00043 | 1.1 | 9.3 |
| pfu_aug1.0_20546.1_33113.t1 | 4 | 4 | EF-hand_5 | 121 | 136 | 5.9e-09 | 34.8 | 0.00072 | 1.8 | 8.0 |
| pfu_aug1.0_20546.1_33113.t1 | 3 | 3 | EF-hand_8 | 122 | 141 | 6.2e-07 | 28.9 | 0.00028 | 0.7 | 9.5 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_20546.1_33113.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20546.1_33113.t1 atgttcgccaaaactctcgtagtgttactttcccttgcgtcagcgctaggagcaccaaccactacacagtccacaggtca ctccgctctagataactttaaagcgctcgtcaggaaacagataacggctctctggacacgggtggatacagaccatgacg gccattttgaaaagaacgacatgcaccacattttggacgactatgacgatgataaaaatggtcaagtgtcaaatgccgag tttgttcatcattttgctgcaagtaacccagaccttaacgtgatagcaaagggactgttcctggagtttgatatggatca tgatggtgaaatcacctacacagacttggacttgtactaccagaaaatagatacaaacgacaatgggcatgtcgaagaat cagaattcgtccactacttcactgagattttcaccatcctgttcgtcattcagcttaaccaacaagccaccactactgcc atagttcatccagctgctgtaggaaaataa |
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Protein
| Protein ID | pfu_aug1.0_20546.1_33113.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20546.1_33113.t1 MFAKTLVVLLSLASALGAPTTTQSTGHSALDNFKALVRKQITALWTRVDTDHDGHFEKNDMHHILDDYDDDKNGQVSNAE FVHHFAASNPDLNVIAKGLFLEFDMDHDGEITYTDLDLYYQKIDTNDNGHVEESEFVHYFTEIFTILFVIQLNQQATTTA IVHPAAVGK |
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