Gene
| Gene Model ID | pfu_aug1.0_20579.1_69349 |
|---|---|
| Locus | scaffold20579.1 : 8386 ... 32049 : + |
| To GenomeBrowser | scaffold20579.1:8386..32049 |
| Genes list of scaffold | scaffold20579.1 |
| Synonym | pfu_aug2.0_59.1_30110 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20579.1_69349.t1 | 3 | 1 | I-set | 11 | 47 | 1.3e-24 | 85.8 | 1.9e-06 | 0.0048 | 16.7 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 1 | Ig_3 | 12 | 33 | 3.2e-10 | 40.3 | 0.49 | 1200.0 | 0.0 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 1 | V-set | 13 | 34 | 3.1e-07 | 30.2 | 0.049 | 120.0 | 2.5 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 1 | ig | 14 | 29 | 2.8e-09 | 36.9 | 0.35 | 860.0 | 0.1 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 1 | Ig_2 | 16 | 42 | 9.9e-19 | 67.2 | 0.041 | 100.0 | 3.1 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 2 | I-set | 60 | 140 | 1.3e-24 | 85.8 | 2.6e-09 | 6.4e-06 | 25.9 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 2 | Ig_2 | 65 | 143 | 9.9e-19 | 67.2 | 2.0e-09 | 5.0e-06 | 26.5 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 2 | Ig_3 | 72 | 125 | 3.2e-10 | 40.3 | 0.0012 | 2.9 | 8.4 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 2 | ig | 72 | 125 | 2.8e-09 | 36.9 | 0.00031 | 0.76 | 9.9 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 2 | V-set | 83 | 129 | 3.1e-07 | 30.2 | 4.9e-05 | 0.12 | 12.2 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 3 | I-set | 148 | 224 | 1.3e-24 | 85.8 | 1.5e-13 | 3.8e-10 | 39.4 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 3 | Ig_2 | 150 | 221 | 9.9e-19 | 67.2 | 1.7e-11 | 4.2e-08 | 33.1 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 3 | Ig_3 | 153 | 220 | 3.2e-10 | 40.3 | 4.2e-09 | 1.0e-05 | 25.9 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 3 | ig | 162 | 218 | 2.8e-09 | 36.9 | 5.0e-08 | 0.00012 | 22.0 |
| pfu_aug1.0_20579.1_69349.t1 | 3 | 3 | V-set | 183 | 220 | 3.1e-07 | 30.2 | 0.00012 | 0.29 | 11.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20579.1_69349.t1 | gi|260804619|ref|XP_002597185.1| | hypothetical protein BRAFLDRAFT_203195 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_20579.1_69349.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20579.1_69349.t1 atggatcctgcgtctaacgatgaacagctgatcgagcacctgattatatcgcctgtgtacgagggagatatgggatggta tacgtgtaaaccaacgaacggagtcggagaagacccggaagcttctgcctttcttaatgtcacttatgagcctgtggtac tagtagacttgatggagagtcaagtaacctgggccctcggtttccgacaacgacttgactgcccggttgatgccaatcca ccagtacacgaggtcagctggaccaagaatagctatgtcgtggatttcagctcaagccgtttaacccagctcagtaacgg ctcgttattggtgtatcaagtacagcaggtggacgcagggagctatagctgtacaccgataagtagtgtaggcagtggga agtcttcacctctcgttcaagttatagtacaagacccgccccgttttattatccgtccagaaccccgttacgtcaaaaga agcggtgatgaggtcacaatggtctgtgcggcagcagggaaaccgaaaccagaaatactgtggagaaaggtgacaggcaa actgaattttagtggtagaattctcctgaacgaaggaaatctgacgataacatcactcaacaaagtggatcatggaaaat acgaatgtgaagcgtctaacgactttgccaccattgttgtcgtcacagaactcattattcaagataccaccccacatgca ccatataacatcactaccattcctgattggttcagtgtacggttgtcatggataccagcttataatggtggaagcaaggc attgtttctgatatgggaagattcggcagaatggggtggccgggacacatctggaggaacagacgctttaaggcaggact tcatcgctaacggaatattccttgttccgcagaccaaaaagagtaatggggatttggacatgatgcatcatgattatttg gcagaaagccaactttatcccccgaatgactatatttataactcagacaagggttatcgtgtgccatacggagggggcca tgactcatatgacccacttctcaaggacgatgattttatgccgaggtcatatgatcgatcgaggtcatatgatctttcaa ggtcatatgatcgttcaaggtcacatgatcgctcaaggtcaaggacaagtgggtatacaaattcatttcatagtgagaag gataatttgttaggaagtgggagaagtcgttttcctgaacaatcttacatgtcaggagcatccagtgttagaagaaggga tacttcccatgatggatatagagacagatctccaaatgatggttaccatggatacggtagtgatcgccatggttaccata acaattattctgatcatcatccatatgtaaatcaatcatttccacgatcatcgtcttcatccaaacctagtttccattgt gacgttaatccgaaagattttttaccacctagacctccgatcggtgataaagccaatggtttcctaccagaacgctataa ccatctctccatgcctaaacaggagaaaaatgaaaattatgatgacgaaaacggttttgttccgacacgccctcccctgc cagtggagtacagggattcatcacttccctactcccctgggcagcaggatcagaccacgcgtttttctcatggactggag agaccgaattatggaccaatggggcataaagaaccctcgtatgaaaacattccagccgatttagacgatgtttttgttcc gtcatttgatcatcactcaccatcacatcattatcgcccgggatttcctcgtcatagttccatgaagccttcgtatcaga cgtatctcactggagatcctgaggaagaggatagctctactcaacccttcgttgctaaagatatcagttccgttttacct tcatttactgaatcttctattcaaccctatccatcctactacgaagatgaaccaactttggtcaatagacttgaaaagcc aaagtggaacattccatttgattcattaaggggagatcaggttgctccagattatcaaagaaattccagaccacagtccc gttcaaatgatttgcgtccaagggaccatttgcaaggtacagtggataagatcagaaaaggcccccgagcccgtcgggca aagtctgcaggaaggcttccgtcctcggaatataacggtgacattccggcacaagttgtacccagggggcctcatgtttc agacagtgatgtgggttacggtagatatggtaatgatggaggtgtacatccagataattattcaaacgacgtagagccat ataaatcaaagcgtgacagtcgatcaagtgtgaatagttccggtaggggaagtatggctgggaggtcacgtcatgtgact gagccgggtaaacctccgtatcttgatctcactcctgactcactgagtagtggactcggcagtcgtaataactcacatgt gacaggttctagtggtaactcgcgcattccgtacgctcgtaaaagtgcttctgtagactcaatgggtaatccccttgacc ctgatatcagtgaggactcatccccgttcttagataatagtgctagaaaagatacctccgcagacgatcagtatgagttt gactcgctccaggcactggaaaatgatctcataaacacgctccgcaagcatccaatcagcagccaggatgacgaactact taacgcaatacaaacgggtctaagcacatctgatttctatgacgatctttacccgaagccatcacggcagagccgttacg aagattccgatgcgcgatttgagagactccgagaggaatttcaccattttcaacgattgcagcaggagcgtcaccatcag gttcggcttgcgatggacagtgatatgttatga |
|
Protein
| Protein ID | pfu_aug1.0_20579.1_69349.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20579.1_69349.t1 MDPASNDEQLIEHLIISPVYEGDMGWYTCKPTNGVGEDPEASAFLNVTYEPVVLVDLMESQVTWALGFRQRLDCPVDANP PVHEVSWTKNSYVVDFSSSRLTQLSNGSLLVYQVQQVDAGSYSCTPISSVGSGKSSPLVQVIVQDPPRFIIRPEPRYVKR SGDEVTMVCAAAGKPKPEILWRKVTGKLNFSGRILLNEGNLTITSLNKVDHGKYECEASNDFATIVVVTELIIQDTTPHA PYNITTIPDWFSVRLSWIPAYNGGSKALFLIWEDSAEWGGRDTSGGTDALRQDFIANGIFLVPQTKKSNGDLDMMHHDYL AESQLYPPNDYIYNSDKGYRVPYGGGHDSYDPLLKDDDFMPRSYDRSRSYDLSRSYDRSRSHDRSRSRTSGYTNSFHSEK DNLLGSGRSRFPEQSYMSGASSVRRRDTSHDGYRDRSPNDGYHGYGSDRHGYHNNYSDHHPYVNQSFPRSSSSSKPSFHC DVNPKDFLPPRPPIGDKANGFLPERYNHLSMPKQEKNENYDDENGFVPTRPPLPVEYRDSSLPYSPGQQDQTTRFSHGLE RPNYGPMGHKEPSYENIPADLDDVFVPSFDHHSPSHHYRPGFPRHSSMKPSYQTYLTGDPEEEDSSTQPFVAKDISSVLP SFTESSIQPYPSYYEDEPTLVNRLEKPKWNIPFDSLRGDQVAPDYQRNSRPQSRSNDLRPRDHLQGTVDKIRKGPRARRA KSAGRLPSSEYNGDIPAQVVPRGPHVSDSDVGYGRYGNDGGVHPDNYSNDVEPYKSKRDSRSSVNSSGRGSMAGRSRHVT EPGKPPYLDLTPDSLSSGLGSRNNSHVTGSSGNSRIPYARKSASVDSMGNPLDPDISEDSSPFLDNSARKDTSADDQYEF DSLQALENDLINTLRKHPISSQDDELLNAIQTGLSTSDFYDDLYPKPSRQSRYEDSDARFERLREEFHHFQRLQQERHHQ VRLAMDSDML |
|