Gene
| Gene Model ID | pfu_aug1.0_20632.1_25878 |
|---|---|
| Locus | scaffold20632.1 : 1 ... 10063 : + |
| To GenomeBrowser | scaffold20632.1:1..10063 |
| Genes list of scaffold | scaffold20632.1 |
| Synonym | NA |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Hif-related1 |
| Description | Best hit to BAG65259 unnamed protein product [Homo sapiens] with 2e-19 by a BLASTP search against NCBI Homo sapiens nr database. We could not retrieve a bHLH domain, and therefore this gene is not included in the bHLH annotation paper. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20632.1_25878.t1 | 1 | 1 | PAS_11 | 3 | 51 | 1.4e-07 | 31.4 | 6.7e-11 | 3.3e-07 | 30.2 |
| pfu_aug1.0_20632.1_25878.t1 | 2 | 1 | PAS_3 | 3 | 45 | 7.7e-06 | 25.9 | 5.7e-09 | 2.8e-05 | 24.1 |
| pfu_aug1.0_20632.1_25878.t1 | 1 | 1 | HIF-1 | 148 | 173 | 9.9e-06 | 24.6 | 4.0e-09 | 2.0e-05 | 23.6 |
| pfu_aug1.0_20632.1_25878.t1 | 2 | 2 | PAS_3 | 187 | 220 | 7.7e-06 | 25.9 | 0.74 | 3700.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20632.1_25878.t1 | gi|331687645|gb|AED87588.1| | hypoxia-inducible factor 1 alpha [Crassostrea virginica] | 9.99967e-42 |
Transcript
| Transcript ID | pfu_aug1.0_20632.1_25878.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20632.1_25878.t1 tgttttccaaaggccagacaatgacaggacagtaccgcttcttggctcgtggaggaggatatgtgtgggtggtgacccag ggcacagtcatcactaacagccgcacccagaaacctcagtgtgtagtctgcgttcactacgtcatcagtaaaatgaattt tattcgtcgtttattcatttcgaataaaccgtttatggatccccagatgatgccgacaaagacaatgaagcaggagccag acatgttccctaagtcactatgtagaaatggtacctttaatcagatgggtagtaatcctaacctactctcaccacactca gtttcgccagctatactttcgccagtcagcagcccagctgactatcagacaatagtggatccatcagacatgtcacagga tatggcccagttattgacctctatggaaacctccaatatgttgaatgaagacaatgaggttgaccttgacactagggctc catacatacccatgaacgtggaggcagattttagcctcgtggcaccaacaacagatgccctgttcagcttgaacagtgac tttgacccaggcacatttggaggaacagagaaagtgtttacctccagagacaaaatcctgcctgaccctccaaaagaaca acgtatgacgttaagggacatgttaggggagagcactgtggtagctgccatagaacagatccctgagactcgtctgatgc agatgaaacgtccactagacatgaacagcctggagaaggggccgcccatcaaacgtatgaagggcatggtggacaatggg cagaaacgtagag |
|
Protein
| Protein ID | pfu_aug1.0_20632.1_25878.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20632.1_25878.t1 FSKGQTMTGQYRFLARGGGYVWVVTQGTVITNSRTQKPQCVVCVHYVISKMNFIRRLFISNKPFMDPQMMPTKTMKQEPD MFPKSLCRNGTFNQMGSNPNLLSPHSVSPAILSPVSSPADYQTIVDPSDMSQDMAQLLTSMETSNMLNEDNEVDLDTRAP YIPMNVEADFSLVAPTTDALFSLNSDFDPGTFGGTEKVFTSRDKILPDPPKEQRMTLRDMLGESTVVAAIEQIPETRLMQ MKRPLDMNSLEKGPPIKRMKGMVDNGQKRR |
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