Gene
| Gene Model ID | pfu_aug1.0_20658.1_33124 |
|---|---|
| Locus | scaffold20658.1 : 1 ... 10045 : + |
| To GenomeBrowser | scaffold20658.1:1..10045 |
| Genes list of scaffold | scaffold20658.1 |
| Synonym | pfu_aug2.0_789.1_31159 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_20658.1_33124.t1 | 2 | 1 | MAM | 10 | 115 | 5.4e-29 | 101.0 | 1.1e-12 | 8.5e-09 | 35.3 |
| pfu_aug1.0_20658.1_33124.t1 | 2 | 2 | MAM | 117 | 239 | 5.4e-29 | 101.0 | 1.6e-21 | 1.2e-17 | 64.1 |
| pfu_aug1.0_20658.1_33124.t1 | 1 | 1 | Ldl_recept_a | 240 | 275 | 2.1e-11 | 43.5 | 5.3e-15 | 3.9e-11 | 42.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_20658.1_33124.t1 | gi|291231262|ref|XP_002735584.1| | 3.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_20658.1_33124.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20658.1_33124.t1 gtttgatgtttttcctattcacctaccagctggttagcaatggcaataacgtggtgatgacacaaaacctggctctgcat aaccgagaacactgcctgaccttcttctatagaggtcttactgaaatgactttcaagatatatattgagtcccagggagt aaaatatgacctatggagctttgccaatagaaatgtatcatggtgggccaaggctcaggtacagttacctgcccttgaca aatctctgctaacgtatgaagtggtgcgacttagtaagaaagttcacgactactacctaccacacttggctctcgatgat atagaaatcttgccaggacaatgcgcttcttatggatattacgtgtatgcagaaggtagccatggtcaggaaggagagta tgcctatataacgtccgttccttttactacttctgtaaaccaaagtcttacattttattaccatatttatgatgaaaggc ccgatgtcgtgaccgaaggtttggcagtggtagcaaaatataacgattctgtgagcaacgagttatggtggcggaattcg tctaccggcaatgtatggacctatgcctgtattgatcttgtaccgaacaaaaatttacagattgctttcgtagctaggaa gcaaatacctagcattgtgggtaattacgatgctgatgtggctgtggatgacgtccttctacagaaccaaatgtgtgcag gatgcgctcctgatgagttcagatgtctggatggtctatgtataagtgcaggcttacgatgtgatggtgtttctgattgt tttgatttttcggacgaggataactgcccttcgtga |
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Protein
| Protein ID | pfu_aug1.0_20658.1_33124.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_20658.1_33124.t1 LMFFLFTYQLVSNGNNVVMTQNLALHNREHCLTFFYRGLTEMTFKIYIESQGVKYDLWSFANRNVSWWAKAQVQLPALDK SLLTYEVVRLSKKVHDYYLPHLALDDIEILPGQCASYGYYVYAEGSHGQEGEYAYITSVPFTTSVNQSLTFYYHIYDERP DVVTEGLAVVAKYNDSVSNELWWRNSSTGNVWTYACIDLVPNKNLQIAFVARKQIPSIVGNYDADVAVDDVLLQNQMCAG CAPDEFRCLDGLCISAGLRCDGVSDCFDFSDEDNCPS |
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