Gene
| Gene Model ID | pfu_aug1.0_2067.1_29964 |
|---|---|
| Locus | scaffold2067.1 : 5912 ... 13235 : - |
| To GenomeBrowser | scaffold2067.1:5912..13235 |
| Genes list of scaffold | scaffold2067.1 |
| Synonym | pfu_aug2.0_553.1_10915 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2067.1_29964.t1 | 2 | 1 | F-box | 5 | 50 | 2.2e-09 | 36.7 | 2.9e-13 | 2.2e-09 | 36.7 |
| pfu_aug1.0_2067.1_29964.t1 | 1 | 1 | F-box-like | 6 | 47 | 1.2e-07 | 31.3 | 4.0e-11 | 3.0e-07 | 30.0 |
| pfu_aug1.0_2067.1_29964.t1 | 2 | 2 | F-box | 257 | 273 | 2.2e-09 | 36.7 | 0.25 | 1800.0 | -1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2067.1_29964.t1 | gi|153792129|ref|NP_001093158.1| | F-box only protein 39 [Mus musculus] | 9.80909e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2067.1_29964.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2067.1_29964.t1 atggaacagtcaaaatgggctaacctaccggacctggttattcttgaaatttacaagtatctaagcgacgcggaccgctt gagcacggctttagtgtgcaagaactggctgcgaatgttccatgcgccatgtctatggcggtggcgctccttcgacatgg gcggctatcgggcgctaaagagcgggatacgcgcctgtcagtttgcggagatcctcggctcacatcttcggtacctcacc ataacatgtaatcatccgtcttaccacacggcgaaagtgtttcagaaagctatggaggacctcttgctaaagatcagatc ggcaaaaatagttgaattcgaaatggagaaacttgaactagaccgattctggaagtatgaaacagcacgtgataaactca ccaataatcttgttcgatttttcaaaggccaggtaaaaattagaatgttcgatatgacggcagcacaaattcccgcgctc ggaggcattcggattttggaaactgtaggaagtagttctggagagaaagttgaagaaatttatctagaggatttctttca ttcaagaattgcagcgtttcagataccgcgattcgttcaagctattacatgtttcaaagaattgaggttcatagcgataa actacaactgcgtatcggatgaaattctggaaatgtttgcaaaatcactcaagggtaaactaagatgcctgaacatgaaa gtgtacaggaacgacccacatcgtcaccaagtttcgccatatatttggaaacgcctccggaacgcatgcccaaaacttcg ggtaaccgtttggatcgaaagtatcggattttacgaagaagtacttccggttcttagtaaggatatgccgctacgcgagt ttcatatgtggaccggatatgacgatgatgcagagtggcgactccacgatacaatttatcatttgaccaatacctacaca ggctcactggaatccgtttccttggagatggataacaaccatgagattgtagatgaagcactactagcgctcctgggacg atgtaagctactgagggagttgaccttgaacgccgttgtcatggtacccaccatagaggtcataatgcaccttatcacag aaaggaaaataaatcttcagtttttccacttcacagcctgtggtatatcagaaacagagtgatccaatcgaaactgcatc ctctatgctgtatacaaggattttgacattttccaatctgtgaccttgacctttgacctatga |
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Protein
| Protein ID | pfu_aug1.0_2067.1_29964.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2067.1_29964.t1 MEQSKWANLPDLVILEIYKYLSDADRLSTALVCKNWLRMFHAPCLWRWRSFDMGGYRALKSGIRACQFAEILGSHLRYLT ITCNHPSYHTAKVFQKAMEDLLLKIRSAKIVEFEMEKLELDRFWKYETARDKLTNNLVRFFKGQVKIRMFDMTAAQIPAL GGIRILETVGSSSGEKVEEIYLEDFFHSRIAAFQIPRFVQAITCFKELRFIAINYNCVSDEILEMFAKSLKGKLRCLNMK VYRNDPHRHQVSPYIWKRLRNACPKLRVTVWIESIGFYEEVLPVLSKDMPLREFHMWTGYDDDAEWRLHDTIYHLTNTYT GSLESVSLEMDNNHEIVDEALLALLGRCKLLRELTLNAVVMVPTIEVIMHLITERKINLQFFHFTACGISETEXSNRNCI LYAVYKDFDIFQSVTLTFDL |
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