Gene
| Gene Model ID | pfu_aug1.0_2067.1_29965 |
|---|---|
| Locus | scaffold2067.1 : 13346 ... 16287 : + |
| To GenomeBrowser | scaffold2067.1:13346..16287 |
| Genes list of scaffold | scaffold2067.1 |
| Synonym | pfu_aug2.0_553.1_10916 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2067.1_29965.t1 | 3 | 1 | F-box | 44 | 88 | 2.0e-06 | 27.2 | 4.1e-10 | 2.0e-06 | 27.2 |
| pfu_aug1.0_2067.1_29965.t1 | 3 | 2 | F-box | 186 | 197 | 2.0e-06 | 27.2 | 0.76 | 3800.0 | -2.3 |
| pfu_aug1.0_2067.1_29965.t1 | 3 | 3 | F-box | 337 | 361 | 2.0e-06 | 27.2 | 0.5 | 2500.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2067.1_29965.t1 | gi|51859532|gb|AAH82089.1| | Fbxo39 protein, partial [Rattus norvegicus] | 3.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2067.1_29965.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2067.1_29965.t1 atggcgaaagtcaatgccaacgcgtgtaggaaaaggagaagtcgtaagaagaaatcaaagaaagaagagagcaaacaaaa agaagaaccctcggatgatgaagaggaaaatgaggagatggatgacagtcaatggtcggcactacccgacatagcgttgt taagtatttacgagtacttatgtgatgcggacagagcacggatggcattagtgtgcacgaactggtcaaggattttcagt tgtccggttttatggcgatggcgaaagtacatactcggtgccacaaacggcaacaggatcggtgaaaaagcttgtgggtt tataaaacgtttcggacaccatatgcggtcactaaacatcggatttatatcgacaaatttcagaaatttcaatcacattg ctacccaatcggaattgatcttcaaaaatttgacatacttcaataaattgaggctcgaaagattcacgttgtcagtagca aacatgggtcaacagtggcacaatccaaggtcacggcaccaaatgctcgatgcgctttgtagattcctccgccgcttaca tcatcttgacgtcatcaaccttgtagctgcccggatgatcatttcagacggatgtcgcgtcctgcagtcactgtcacgcg ggaaagcatctcaaactctcagctcactattcatcgaagacatgtttcaacggaatatcattccaagtgcatctagaaga tttgcaaatgccatgtataaatttcaaaatattcaactcgcatatatgaattacaatatgatcaacgatagaattctcga acatttagcgtgtatacatatacgaaaattaacgctaacgctcgacactattgtcgcccgacgagttatactttcagatc attggaaacattttcgcgcaatttctagccaatctgaggtagcgttgcaaatttacgctgcagggtttcggcaaattgtt tccgatgttcttgtccgaggaataccattggtgcaactcgaaatcgtctcatggcctgggctcagcgacgctcgagctat gatggacgcacaaatgccccttcttttgcgtcatatagcgtctacgttttcactcactttggaattcttccgcttgagta tggacgcccacctaccatttgacgcagagctctgttacctgctgacgaaatgtaagagtcttcgtgcactgaacctatac tgtagcctctctgtgtccacgatcaaagagatgtgcgtgttacaagagacaggaaaaatgaaattgaaatctttaaaact tgcagtacatgggttgtccccctttgatatggaacagttaaactccacaagagagcgtcttgtcaatgccatcacggaca agaaatctgggaatgcttcagcaacaccgtcatga |
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Protein
| Protein ID | pfu_aug1.0_2067.1_29965.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2067.1_29965.t1 MAKVNANACRKRRSRKKKSKKEESKQKEEPSDDEEENEEMDDSQWSALPDIALLSIYEYLCDADRARMALVCTNWSRIFS CPVLWRWRKYILGATNGNRIGEKACGFIKRFGHHMRSLNIGFISTNFRNFNHIATQSELIFKNLTYFNKLRLERFTLSVA NMGQQWHNPRSRHQMLDALCRFLRRLHHLDVINLVAARMIISDGCRVLQSLSRGKASQTLSSLFIEDMFQRNIIPSASRR FANAMYKFQNIQLAYMNYNMINDRILEHLACIHIRKLTLTLDTIVARRVILSDHWKHFRAISSQSEVALQIYAAGFRQIV SDVLVRGIPLVQLEIVSWPGLSDARAMMDAQMPLLLRHIASTFSLTLEFFRLSMDAHLPFDAELCYLLTKCKSLRALNLY CSLSVSTIKEMCVLQETGKMKLKSLKLAVHGLSPFDMEQLNSTRERLVNAITDKKSGNASATPS |
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