Gene
| Gene Model ID | pfu_aug1.0_2075.1_66191 |
|---|---|
| Locus | scaffold2075.1 : 29710 ... 47209 : - |
| To GenomeBrowser | scaffold2075.1:29710..47209 |
| Genes list of scaffold | scaffold2075.1 |
| Synonym | pfu_aug2.0_111.1_03650 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2075.1_66191.t1 | 3 | 1 | Nrap | 1 | 418 | 0.0 | 595.0 | 0.0 | 0.0 | 366.3 |
| pfu_aug1.0_2075.1_66191.t1 | 3 | 2 | Nrap | 430 | 568 | 0.0 | 595.0 | 5.395e-43 | 8.99999e-40 | 136.0 |
| pfu_aug1.0_2075.1_66191.t1 | 3 | 3 | Nrap | 609 | 717 | 0.0 | 595.0 | 6.1e-29 | 1.0e-25 | 89.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2075.1_66191.t1 | gi|62900684|sp|Q6NRY2.2|NOL6_XENLA | Nucleolar protein 6 [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2075.1_66191.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2075.1_66191.t1 gctaaagatttccgagaattctggggtgagaagtctgagttaaggcgctttaaggatggcagtatatgtgaagctgtagc atggatgaatgatggaaagatatctgagaggagaaatgtgtgtcggtctgttataagacatgtactgtcaaggcattttg agataccccagaagagtatactgtacatccacaatcagcttgacgtgttactgcagcagagagctgacctgtcagacagt acaattagctgtgatactggagagatggaacatcaacaaattatgaagagctacgatagcttgtgtaaaatactccgtaa tctcaaagatctgcctcttaccattaactctatacaaggaacctcacctagtcttaggttcacagaggcagtacctcctt taccgtcagtgtgtaaggtagggatatatagaggggagggtgaggataaaagggagttacctttaccgaagaaatgtcca ttctacacaccttacctgaaagtgatctgtcatttagagggtagtggtaagtggccagacgacctccaggcattcagaca tttaaaggcagcattccacatcaagttaggagaagttctcactgaccagcaatcattacctgttcacatcactccaacac atgtggatgttaagaaagatggctttgtattccgtgttgagctggcttatacaagggaaatagcgttaatgaagctctac aagaccccagaaggcatggtaaaatacagggacaccccagaatcactgaacttagagagggaaatacaacatttacccca gttaaccagcacattacatggactacagcagcagcataactcctttggtgccgtagcgagacttgccaaacggtggatat catcacaacttctcattgactacatcttagaggaggccatagaactaatgactgcgtacctgtatatcacacctgaacca tactctgtacctggatgcgccatagtaggatttcagagatggttacatttattggccaatcatgattggaagatgtcacc actgatggttaatctcaacaataagttcacaagtgatgactttattgagataccctccagatttcagaaagagagaacaa ctttacctctgatgtttatagccacccctgaggacaaaactatgtcaatatggacacgtaaaatgccaactgcaccatta ctgaatcgtatgatgttacttgctcaggaatcacttcacgtcttgtcagaaaatgtcagatctggagttatcagaagtat agagtacaaggctaaagaattccgagaattctggggtgagaaatcggagttaaggcgctttaaggatggcagtatatgtg aagctgtagcatggatgaatgatggaaagatatctgagaggagaaatgtgtgtcggtctgttataagacatgtactgttt aggcattttgagataccccagaagagtatactgtacatccacaatcagcttgacgtgttactgcagcagagagctgacct gtcagacagtacgattagctgtgatactggagagatggaacatcaacaaataatgaagagctatgatagcttgtgtaaat tactccgtaacctcaaagatctgcctcttaccattaactctatacaaggaacctcacctagtcttagattcacagaggta gtacctcctttaccgtcagtgtgtaaggtagggatatatagaggggagggtgaggataaaagggagttacctttaccgaa gaaatgtccattctacacaccttacctgaaagaaattatgtctatgtacaagcacatgtattttataaaggatggctttg ttttccgcgttgagctggcttatacaagggaaatagcgttaatgaagctctataagaccccagaaggcatggtaaaatac aaggacactccagaatcattgaacttagaaagggaaatacaacatttaccccagttaaccagcacattacatggactaca gcagcagcataactcctttggtgccgtagcgagactggccaaacggtggatagcatcacaacttctgactgactacatct cagaggaggctatagaacttatgactgcgtacctgtatatctcacctgaaccatactctgtacctgggatgtaccaatca tag |
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Protein
| Protein ID | pfu_aug1.0_2075.1_66191.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2075.1_66191.t1 AKDFREFWGEKSELRRFKDGSICEAVAWMNDGKISERRNVCRSVIRHVLSRHFEIPQKSILYIHNQLDVLLQQRADLSDS TISCDTGEMEHQQIMKSYDSLCKILRNLKDLPLTINSIQGTSPSLRFTEAVPPLPSVCKVGIYRGEGEDKRELPLPKKCP FYTPYLKVICHLEGSGKWPDDLQAFRHLKAAFHIKLGEVLTDQQSLPVHITPTHVDVKKDGFVFRVELAYTREIALMKLY KTPEGMVKYRDTPESLNLEREIQHLPQLTSTLHGLQQQHNSFGAVARLAKRWISSQLLIDYILEEAIELMTAYLYITPEP YSVPGCAIVGFQRWLHLLANHDWKMSPLMVNLNNKFTSDDFIEIPSRFQKERTTLPLMFIATPEDKTMSIWTRKMPTAPL LNRMMLLAQESLHVLSENVRSGVIRSIEYKAKEFREFWGEKSELRRFKDGSICEAVAWMNDGKISERRNVCRSVIRHVLF RHFEIPQKSILYIHNQLDVLLQQRADLSDSTISCDTGEMEHQQIMKSYDSLCKLLRNLKDLPLTINSIQGTSPSLRFTEV VPPLPSVCKVGIYRGEGEDKRELPLPKKCPFYTPYLKEIMSMYKHMYFIKDGFVFRVELAYTREIALMKLYKTPEGMVKY KDTPESLNLEREIQHLPQLTSTLHGLQQQHNSFGAVARLAKRWIASQLLTDYISEEAIELMTAYLYISPEPYSVPGMYQS |
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