Gene
| Gene Model ID | pfu_aug1.0_2084.1_00960 |
|---|---|
| Locus | scaffold2084.1 : 15986 ... 22276 : + |
| To GenomeBrowser | scaffold2084.1:15986..22276 |
| Genes list of scaffold | scaffold2084.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2084.1_00960.t1 | 1 | 1 | Lactamase_B_3 | 83 | 250 | 2.2e-11 | 43.7 | 7.6e-15 | 3.7e-11 | 42.9 |
| pfu_aug1.0_2084.1_00960.t1 | 1 | 1 | Lactamase_B_2 | 97 | 266 | 5.6e-29 | 101.0 | 1.5e-32 | 7.4e-29 | 100.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2084.1_00960.t1 | gi|72012407|ref|XP_782815.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2084.1_00960.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2084.1_00960.t1 atggatgatgttttcaatgattcagaagacgatagttatacaaaacctatactgaagaacggaaagtacagaaatccctg gaaaggctattcaattccttcatttacagatgttttcaaattccttgtctttgaaaaagacaatagtaatataccaaaca aagaggaacttgacaagattctgcctgtagaaaaaccagattttgaaaaactaaataacccacctgtatccggtattcaa gcattgtggattggccatgcttccattcttgtgcagtttgacgggatttcagttttagcggaccctgtatttagtgaaag atgttctccgtcacaatgggttggaccaaaacgatacagaccaactccctgtacagtagaagaacttccacatttagatg cagtcgttataagtcactctcattatgaccatttggattataattccgtgagacaacttaatgcaaagtatggtgataag ttatggtggtatgtaccgatgggtaccaagctgtggatgacagaggctggttgtaataatgtggtagagcttagttggtg ggaagaggcacatcatcccgggaaggaaaacattatgtttgcttgcacacccacacaacattggagtaataggtctccat ttgattcaaataagacactttggggtagctgggtaataaagggacccaaccacagcttttacttcacaggagattccgct tactgtgcgggtttccgacagataggtaggaagtacggaccgtttacactggcagctatacctgtaggagcctatgaacc acagtatgtgatatctgactattag |
|
Protein
| Protein ID | pfu_aug1.0_2084.1_00960.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2084.1_00960.t1 MDDVFNDSEDDSYTKPILKNGKYRNPWKGYSIPSFTDVFKFLVFEKDNSNIPNKEELDKILPVEKPDFEKLNNPPVSGIQ ALWIGHASILVQFDGISVLADPVFSERCSPSQWVGPKRYRPTPCTVEELPHLDAVVISHSHYDHLDYNSVRQLNAKYGDK LWWYVPMGTKLWMTEAGCNNVVELSWWEEAHHPGKENIMFACTPTQHWSNRSPFDSNKTLWGSWVIKGPNHSFYFTGDSA YCAGFRQIGRKYGPFTLAAIPVGAYEPQYVISDY |
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