Gene
| Gene Model ID | pfu_aug1.0_2085.1_51508 |
|---|---|
| Locus | scaffold2085.1 : 25721 ... 33345 : - |
| To GenomeBrowser | scaffold2085.1:25721..33345 |
| Genes list of scaffold | scaffold2085.1 |
| Synonym | pfu_aug2.0_94.1_13576 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2085.1_51508.t1 | 1 | 1 | GH3 | 13 | 424 | 0.0 | 297.5 | 0.0 | 0.0 | 297.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2085.1_51508.t1 | gi|260833554|ref|XP_002611722.1| | hypothetical protein BRAFLDRAFT_63587 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2085.1_51508.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2085.1_51508.t1 atgatgcgcttttcaaggtcaagtagaaaacttcagaaaagtttaaagttcttttacaccccccgttggaggacatgtga agcaggggtgcctgtaggtcctaactcatcctcacccaccaatacaaagcaacttctcaatgtttattcaacacccaaag ctgggttcgaaatcttatctgaaccagaagcattatacattcacttactatttggaatgaaagacaaacacattggtatg ctggaggcaaatttctcatcaattattttgtcttcattcaaggcattggatattcactggaaagatatcattgaagacat tgagaaagggagagtaaatcctaatttgaaaatagatgatgacgttcgtaatgaactagataaagtattgaaacctgatc catctagagctcaggagcttagggaagcctttcaaggtggacctataggtctggcaaaacgtatctggccaaactgccac ttaatacttgctgcagattcagggtcgtttgaactgccggcaaatattctacgagagacctactgtaagaatcttcctat atactctcccctatatgctgcatcagaaggtttgcttggagtaaatgtttggccattgaagcatcccagtcattatttgc tggctcccaagtcaatgttctttgagttcatccctgtagagcattgtaaagaagaccagccagccactctatttttagat caggttcaacttggtgaagagtatgagttggtcatatcaacagcaggcggattttggcgttacagatttggtgacgtcgt cagagtgactgggttttacaaccagtgtcctattatagagttcatgtacagacaaggacagtttttgaatgtcagaggtg aaaaaacatcagaatcatcgttttatcaggccttgagtaaagcatgcgagtcatggtcggatgtcaaacttgttgattac tgctgctctgagagcatcttaattgatgatcaaggatcctcgtggaagtcttatgctccgtactattatgtgttcttgga gttggatggcccaggaaagctgacagcagaacaaaagaataagattgatgagattttggctgagcagtcgtatgtttaca agtccttcagaaataaaggaagtatacgtcctatggtggttaaaatcgtaaaaccaggaacattcaaagagctgagagag ttcaccatagagactaccactgcatcagcaaaccagtacaagatccccagaacactcaaacgaaaggaggctgtgaactt tgtgctagatagagtgattaagggggattga |
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Protein
| Protein ID | pfu_aug1.0_2085.1_51508.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2085.1_51508.t1 MMRFSRSSRKLQKSLKFFYTPRWRTCEAGVPVGPNSSSPTNTKQLLNVYSTPKAGFEILSEPEALYIHLLFGMKDKHIGM LEANFSSIILSSFKALDIHWKDIIEDIEKGRVNPNLKIDDDVRNELDKVLKPDPSRAQELREAFQGGPIGLAKRIWPNCH LILAADSGSFELPANILRETYCKNLPIYSPLYAASEGLLGVNVWPLKHPSHYLLAPKSMFFEFIPVEHCKEDQPATLFLD QVQLGEEYELVISTAGGFWRYRFGDVVRVTGFYNQCPIIEFMYRQGQFLNVRGEKTSESSFYQALSKACESWSDVKLVDY CCSESILIDDQGSSWKSYAPYYYVFLELDGPGKLTAEQKNKIDEILAEQSYVYKSFRNKGSIRPMVVKIVKPGTFKELRE FTIETTTASANQYKIPRTLKRKEAVNFVLDRVIKGD |
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