Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_2085.1_51509
Locus scaffold2085.1 : 33150 ... 34065 : +
To GenomeBrowser scaffold2085.1:33150..34065
Genes list of scaffold scaffold2085.1
Synonym pfu_aug2.0_11656.1_22994

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_2085.1_51509.t1 1 1 Cyt-b5 64 102 3.1e-06 26.8 6.0e-10 4.5e-06 26.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_2085.1_51509.t1 gi|91081249|ref|XP_975650.1| PREDICTED: membrane-associated progesterone receptor component 1 [Tribolium castaneum] 2.0e-27

Transcript
Transcript IDpfu_aug1.0_2085.1_51509.t1
Definition-
>pfu_aug1.0_2085.1_51509.t1
atggcaaacgaagaaagtgtagagaaaactgagggatttctcacaaaattagtcacagaactcgtgagtagtccacttaa
tattggactgctgtgcatatgtggattcctgctgtacaaaattttcgctggcagacgaagttcgccgcccccgcgaaaac
ccgagctgccgaagatgaagaaacaagattttacacttgaacaactcaaagaatatgatggccgcggactagagggacgc
attttgattgcagtaaatggaaaagtgtttgatgttacaagaggcaaacgtttctatggtcctggtatgtga

Protein
Protein IDpfu_aug1.0_2085.1_51509.t1
Definition-
>pfu_aug1.0_2085.1_51509.t1
MANEESVEKTEGFLTKLVTELVSSPLNIGLLCICGFLLYKIFAGRRSSPPPRKPELPKMKKQDFTLEQLKEYDGRGLEGR
ILIAVNGKVFDVTRGKRFYGPGM

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